Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55580 565 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G53830 501 / 3e-175 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 117 / 3e-28 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 91 / 3e-19 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 91 / 4e-19 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT3G23270 88 / 4e-18 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 88 / 4e-18 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 88 / 4e-18 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 87 / 8e-18 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G47660 83 / 2e-16 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059800 [exp] 768 / 0 AT3G55580 566 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.016G101700 [exp] 521 / 0 AT3G53830 547 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.006G089901 [exp] 120 / 8e-33 AT3G53830 129 / 1e-36 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.007G100200 [exp] 111 / 2e-26 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.003G197600 [exp] 103 / 4e-23 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 103 / 4e-23 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 102 / 9e-23 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 100 / 3e-22 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 96 / 1e-20 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004700 [exp] 607 / 0 AT3G55580 603 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10040266 [exp] 589 / 0 AT3G55580 588 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 111 / 2e-26 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10039618 [exp] 110 / 3e-26 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10037192 [exp] 102 / 1e-22 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036737 [exp] 100 / 3e-22 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10024157 [exp] 99 / 1e-21 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 98 / 4e-21 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10002751 [exp] 97 / 5e-21 AT5G19420 949 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 97 / 6e-21 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.010G199100.2 pacid=42799155 polypeptide=Potri.010G199100.2.p locus=Potri.010G199100 ID=Potri.010G199100.2.v4.1 annot-version=v4.1 ATGAATGGGGAGGGAAAGGAAGAAGCAGTGAAAATGGAGGTGAACAATGAGAGATTGGTTTTTATGTGGGGTTATTTACCGGGTGCTTTGCCGCAAAGGT CGCCGATTTCGTCTCCGCTTGCTGTCAGGTCGACGGTGTATGCGTGGAAGGATGTTTGTGGTGGCGGTTGCGGTTTCGCCATGGCCATTTCTGAGTCTGG AAAGCTCATTACATGGGGTTCAACAGATGATCTAGGTCAAAGCTATGTCACATCCGGGAAGCATGGGGAAACTCCCGAGGCTTTCCCTCTCCCAACTGAG GCTTCCATTGTAGAAGCTGCTGCTGGTTGGGCGCATTGTGTAGCAGCTACAGACACTGGAGAAGTCTATACATGGGGATGGAAAGAATGTATTCCCTCAG GGAAAGTCTTTGGAGATCCATCAGGGGCGGGAGGATCAGCAAAGGATGCGTTTGAAAGACAGAATCTGTTTTTTACAGAACAAGTCAGCCCTCGCTCGCA AGGTTCGAGGTCTAGCAGTGGAAGTGGAACCTTTTCTGGGGTTGATGGTAGAGGAAGTGGAGATGAAAGTACAAAGAGGCGGAGAATAGCATCAGCAAAA CAAGCAGCCGAAAGCTCATCTGCCGGAGATGAAACACTCTCAGCATTGCCATGCCTAGTAACTCTTAACCCGGGAGTGAGGGTTGCCACTGTTGCAGCTG GCGGGCGCCACACTTTAGCATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGTGGCGAAGGGCAGCTTGGTTTGGGCTCCCGGATACGTATGGT GTCCTCTCCTCATCCCATACCTTGCATTGACTCTGCTTACGGAAAAGATAGAGCTGTAGTGCTTTCTCGAGGGGGCATGACTTCAGAGGGACAGAGTTTT AGAGTTCCTGGAAGTCATGTTAAGGGGATTGCTTGTGGAGGTCGACACAGTGCGGTAATTACAGATGCTGGAGCACTGCTTACTTTTGGCTGGGGACTTT ATGGACAGTGTGGTCAAGGAAGCACAGATGATGAGTTAAGCCCAACTTGTGTATCTTCTTTGCTGGGCATTAGGATAGAGGCAGTTGCCGCAGGGTTATG GCATACCGTTTGTGTTTCTGCTGATGGCGATGTCTACTCATTTGGTGGGAATCAGTTTGGACAGTTGGGAACTGGTGGTGACCAGGCAGAGACTCTCCCC AGACTCTTGGAAGCTCCAAGCTTGGAAAATATACATGCGAAAACAGTTTCTTGTGGGGCTCGCCACAGTGCTATAATCTCAGAGGATGGAAAAGTATTCT GCTGGGGATGGAACAAGTATGGCCAGCTTGGCTTGGGTGATGTGATTGACCGCAACATTCCTTCTCAAGTTACCATCGATGGCTGTGTCCCTAAAACTGT AGCATGTGGCTGGTGGCATACCCTTATTCTAGCCGAGTCACCTACTTGA
AA sequence Show only first row Show all	>Potri.010G199100.2 pacid=42799155 polypeptide=Potri.010G199100.2.p locus=Potri.010G199100 ID=Potri.010G199100.2.v4.1 annot-version=v4.1 MNGEGKEEAVKMEVNNERLVFMWGYLPGALPQRSPISSPLAVRSTVYAWKDVCGGGCGFAMAISESGKLITWGSTDDLGQSYVTSGKHGETPEAFPLPTE ASIVEAAAGWAHCVAATDTGEVYTWGWKECIPSGKVFGDPSGAGGSAKDAFERQNLFFTEQVSPRSQGSRSSSGSGTFSGVDGRGSGDESTKRRRIASAK QAAESSSAGDETLSALPCLVTLNPGVRVATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIDSAYGKDRAVVLSRGGMTSEGQSF RVPGSHVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEAVAAGLWHTVCVSADGDVYSFGGNQFGQLGTGGDQAETLP RLLEAPSLENIHAKTVSCGARHSAIISEDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIDGCVPKTVACGWWHTLILAESPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55580			Regulator of chromosome conden...		Potri.010G199100 [exp]	0	1
AT3G55580			Regulator of chromosome conden...		Potri.008G059800 [exp]	1.00	0.7736
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.002G120400 [exp]	2.44	0.7303
AT3G54500			unknown protein		Potri.001G025100 [exp]	2.44	0.7236
AT1G60590			Pectin lyase-like superfamily ...		Potri.010G042100 [exp]	6.70	0.6897
AT5G64170			dentin sialophosphoprotein-rel...		Potri.001G205800 [exp]	9.16	0.6957
AT3G17130			Plant invertase/pectin methyle...		Potri.008G102600 [exp]	10.67	0.6788
AT4G37820			unknown protein		Potri.002G112800 [exp]	10.90	0.6491
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.010G208500 [exp]	23.64	0.6171
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Potri.003G067100 [exp]	28.56	0.6181
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Potri.005G064300 [exp]	31.52	0.6140	PtrWBC5-1

Compare expression of checked genes

Potri.010G199100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.