Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39760 528 / 0 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT5G19000 429 / 3e-149 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT3G06190 415 / 1e-143 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT3G03740 392 / 1e-133 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT3G43700 369 / 2e-125 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT5G21010 366 / 2e-124 ATBPM5 BTB-POZ and MATH domain 5 (.1) AT5G06600 50 / 2e-06 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT5G52330 49 / 5e-06 TRAF-like superfamily protein (.1.2) AT3G11910 48 / 1e-05 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G13060 45 / 0.0001 ABAP1 ARMADILLO BTB protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059600 [exp] 715 / 0 AT2G39760 549 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.010G029500 [exp] 447 / 4e-156 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G200700 [exp] 427 / 1e-148 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.009G156500 [exp] 400 / 3e-138 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.004G194200 [exp] 397 / 6e-137 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.019G039500 [exp] 374 / 2e-127 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.001G184200 [exp] 172 / 5e-51 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.016G064100 [exp] 47 / 2e-05 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 47 / 2e-05 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004701 [exp] 605 / 0 AT2G39760 598 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10040267 [exp] 602 / 0 AT2G39760 597 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10021946 [exp] 422 / 2e-146 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10003365 [exp] 392 / 3e-133 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10008421 [exp] 392 / 3e-133 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10041235 [exp] 190 / 5e-58 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10017291 [exp] 49 / 4e-06 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3) Lus10008949 [exp] 46 / 4e-05 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10043456 [exp] 46 / 6e-05 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10042583 [exp] 45 / 8e-05 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.010G199200.1 pacid=42797492 polypeptide=Potri.010G199200.1.p locus=Potri.010G199200 ID=Potri.010G199200.1.v4.1 annot-version=v4.1 ATGGACGATTTCAAGGCAGATATTGATAAGGAGTCATGTTCGAAGTCAATAAACGAGACGGTGAATGGGTCTCACCAGTTTACGATAAAGGGGTATTCAT TAGCGAAGGGGATGGGAGCTGGGAAATGCATACCGAGTGATGTTTTCAATGTAGGTGGTTATGATTGGGGGGTTTATTTTTACCCAGATGGGAAAAACCC TGAAGATAGTTCGATGTATGTGTCGGTTTTTATTGCATTAGCGAGCGAAGGAACGGATGTTAGGGCTTTGTTTGAGTTGACGCTGGTGGATCAGAGCGGG AAAGGGAAGCATAAAGTGCATAGTCATTTTGATCGTGCGTTGGAGAGTGGACCTTATTCGTTGAAATACAGAGGGAGCATGTGGGGTTACAAACGTTTCT TCCGAAGGACAACCCTGGAAACTTCTGATTATCTGAAGGACGACTGCCTTATCATGAATTGCACTGTTGGAGTTGTCAGAACACATCTTGAAGGACCGAA ACAGTACTCCATTTCAGTTCCGCCTTCAGACATGGGTCAGGGTCTTAAAGAACTCCTGGAGTCTGAAGCTGGTTGTGACATAGCTTTCCAGGTTGGTGAT GAGACATTTAAAGCTCATAAGTTGATCCTTGCTGCTCGTTCACCTGTTTTCAGAGCTCAGTTTTTTGGACTTGTTGGGGATCCTAAAATGGATAAAGTAG CAGTGAAGGATGTTGATCCTTTGATATTCAAGGCAATGCTTCTGTTTATATACACGGACAAACTTCCTGATGTGCATGAGATAACGGGTTCTACATCGAT GTGCACATCCACCAATATGGTACAGCATCTGTTGGCTGTCTCTGACCTTTACAATTTAGATCGGTTGAAATTGTTATGTGAATCAAAGTTGTGTGAGGAA CTAAGTGCCGAGACAGTAGCAACAACACTGGCGTTGGCCGAGCAGCACCAGTGTATGCAACTCAAGGCCATCTGTTTGAAATTTGCAGCAAATCCAGCAA ACTTGGGAGAGGTAATGCAGTCAGAAGGGTTCCGGCACTTAGAGGAGAGCTGCCCTTCAATGTTATGTGAGTTGCTGAAGACATTCGCTTCAGGAGATGA GAACACGAGTCTTCTGTCTGGTAGGAAGAGGAGTGGCAGCAGCATGCTTGGGCTTGATTTGGCGACTGATGGGGCTCCAGAAGAATCAGCAAATCCCAAT GGCAGGCGTCTGAGGAGGCGGTTTTAG
AA sequence Show only first row Show all	>Potri.010G199200.1 pacid=42797492 polypeptide=Potri.010G199200.1.p locus=Potri.010G199200 ID=Potri.010G199200.1.v4.1 annot-version=v4.1 MDDFKADIDKESCSKSINETVNGSHQFTIKGYSLAKGMGAGKCIPSDVFNVGGYDWGVYFYPDGKNPEDSSMYVSVFIALASEGTDVRALFELTLVDQSG KGKHKVHSHFDRALESGPYSLKYRGSMWGYKRFFRRTTLETSDYLKDDCLIMNCTVGVVRTHLEGPKQYSISVPPSDMGQGLKELLESEAGCDIAFQVGD ETFKAHKLILAARSPVFRAQFFGLVGDPKMDKVAVKDVDPLIFKAMLLFIYTDKLPDVHEITGSTSMCTSTNMVQHLLAVSDLYNLDRLKLLCESKLCEE LSAETVATTLALAEQHQCMQLKAICLKFAANPANLGEVMQSEGFRHLEESCPSMLCELLKTFASGDENTSLLSGRKRSGSSMLGLDLATDGAPEESANPN GRRLRRRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Potri.010G199200 [exp]	0	1
AT2G42040			unknown protein		Potri.016G058100 [exp]	1.41	0.8673
AT1G10790			unknown protein		Potri.001G210600 [exp]	2.00	0.8624
AT1G19140			unknown protein		Potri.006G139800 [exp]	3.00	0.8672
AT1G16560			Per1-like family protein (.1.2...		Potri.015G136600 [exp]	5.47	0.8562
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.016G083900 [exp]	8.77	0.8704
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Potri.017G085400 [exp]	11.87	0.7636
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.010G167600 [exp]	12.12	0.8490
AT1G68910		WIT2	WPP domain-interacting protein...		Potri.010G135900 [exp]	13.56	0.7976
AT3G50910			unknown protein		Potri.007G022100 [exp]	13.67	0.8383
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.001G060100 [exp]	15.29	0.8462

Compare expression of checked genes

Potri.010G199200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.