Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39750 997 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 923 / 0 Putative methyltransferase family protein (.1) AT1G77260 847 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G23300 461 / 4e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 461 / 7e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 468 / 4e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G34300 464 / 5e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G29470 462 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G40280 455 / 4e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 463 / 5e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059500 [exp] 1160 / 0 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 834 / 0 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G118100 [exp] 484 / 1e-159 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 462 / 2e-155 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 461 / 2e-152 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 457 / 6e-151 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G065200 [exp] 453 / 5e-149 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 452 / 9e-149 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 457 / 2e-148 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030155 [exp] 1029 / 0 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 1018 / 0 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 985 / 0 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 946 / 0 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042762 [exp] 627 / 0 AT1G77260 741 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029731 [exp] 619 / 0 AT1G77260 732 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028656 [exp] 610 / 0 AT1G77260 744 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10000973 [exp] 535 / 7e-178 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018954 [exp] 474 / 1e-157 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 468 / 2e-155 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.010G199300.1 pacid=42799160 polypeptide=Potri.010G199300.1.p locus=Potri.010G199300 ID=Potri.010G199300.1.v4.1 annot-version=v4.1 ATGAAACCACTCATCAACACAGATTTCATTAAAACCCCACAAATCCTCAAAATCACAGCCTTCGCTTTTATCTCAATCACTTTTTTCTATTTAGGCAAAC ACTGGTCCAACAGTGGCTACCAACAACTCCTCTTCTTCTCCACACCACAAAACTCGATTTCCATCTCTCCTAACAACGACAAGTCGTTCAACATCACCTC TCTAATTCCCCCAAACGAATCCGATCACCCCCCTACAGAACAAGCCATAAACCCGACTCCACCCTCCATTTACCCACCTCCCGATGAATCTCCATTGTCC GATCCCAACCGGACGTTTGGGATCATTGATTCCGATGGCAAAATGACTGATGATTTCGAGGTTGGAGAGTTTGATCCGGATATTGCGGAGAATTGGGGGA ATGAGACTGAAATTGAGAGTGCAAGTACGAATTTCAAGGTCAGGGTTAGGAAATATGAGTTGTGTCCAGGGAGCATGAGAGAGTATATACCGTGTTTGGA TAATGTGGAGGCTATTAAGAGGTTGAAATTGACGGAGAAAGGGGAGAGATTCGAAAGGCACTGTCCAGAGAAGGGGAAGGGACTGAATTGCTTGGTCCCC CCCCCTAAAGGATACCGGCAGCCAATTCCATGGCCGCGGAGTCGTGATGAGGTATGGTATAGCAATGTTCCTCATACACGATTAGCTGATGATAAAGGGG GCCAAAACTGGATTTCTAAAGAGAAAGAGAAGTTTAAGTTCCCCGGAGGTGGTACACAGTTCATACACGGGGCAGATAAATATTTGGATCAGATTGCTCA GATGGTCCCAGATATTACATTTGGTCATCATACTCGAATGATTCTAGATGTTGGATGTGGTGTGGCAAGTTTTGGTGCCTATTTACTATCACGGAATGTT ATGACCATGTCTATTGCTCCCAAAGATGTTCACGAGAATCAGATTCAATTTGCTCTTGAGCGTGGTGTACCTGCAATGGTGGCTGCATTTGCAACTCACC GTCTACTATATCCGAGCCAAGCATTTGAATTGATACATTGTTCAAGATGCAGAATCAACTGGACTCGTGATGATGGAATTTTGCTCCTTGAGGTCAATAG GATGCTCCGGGCAGGAGGATACTTTGCTTGGGCAGCACAACCAGTTTATAAGCATGAACATGTATTAGAGGAACAGTGGGCAGAGATGCTTAACCTTACC ACTCATCTTTGCTGGGAGCTTGTTAAGAAGGAGGGATATATTGCAATATGGAAAAAACCCCTAAACAACAACTGCTACCTAAGCCGTGACACAGGAGCAA TACCTCCATTGTGTGATCCAGACGATGATCCTGATAATGTTTGGTATGTTGATCTGAAGGCATGCATTAGTCGACTTCCGGAGAATGGATATGGAGCAAA TGTTCCCACGTGGCCTTCTCGTTTGCACACTCCACCTGATAGACTCCAGAGCATACAATATGAATCATACATAGCCAGAAAAGAGCTATTAAAGGCAGAA AATAAGTTTTGGTCCGAAACAATAGCTGGCTATGTCCGTGCTTGGCATTGGAAGAAATTTAAACTTAGAAATGTGATGGACATGAAAGCTGGCTTTGGAG GATTCGCGGCTGCATTAATTGATCAAGGATTTGATTGCTGGGTTTTGAACGTGGTTCCTGTTAGCGGATCCAACACGTTGCCTGTTTTATATGACCGCGG GCTCTTGGGAGTTATGCATGATTGGTGTGAACCATTCGATACATACCCAAGAACCTATGATTTATTGCATGCAGCTGGCCTCTTTTCTGTTGAAAGGAAA AGATGTAATATGTCTACAATCATGCTCGAGATGGATCGCATACTTAGACCCGGTGGTCGAGTATACATTCGTGACTCTCTTGATGTCATGGATGAACTTC TACAGATAGCTAAAGCCATGGGCTGGCAGGCAACTTTGCGCGACACATCTGAGGGTCCTCATGCAAGTTACAGGATCTTGACTTGTGACAAGCACCTTTT GCGTCCTTGA
AA sequence Show only first row Show all	>Potri.010G199300.1 pacid=42799160 polypeptide=Potri.010G199300.1.p locus=Potri.010G199300 ID=Potri.010G199300.1.v4.1 annot-version=v4.1 MKPLINTDFIKTPQILKITAFAFISITFFYLGKHWSNSGYQQLLFFSTPQNSISISPNNDKSFNITSLIPPNESDHPPTEQAINPTPPSIYPPPDESPLS DPNRTFGIIDSDGKMTDDFEVGEFDPDIAENWGNETEIESASTNFKVRVRKYELCPGSMREYIPCLDNVEAIKRLKLTEKGERFERHCPEKGKGLNCLVP PPKGYRQPIPWPRSRDEVWYSNVPHTRLADDKGGQNWISKEKEKFKFPGGGTQFIHGADKYLDQIAQMVPDITFGHHTRMILDVGCGVASFGAYLLSRNV MTMSIAPKDVHENQIQFALERGVPAMVAAFATHRLLYPSQAFELIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEHVLEEQWAEMLNLT THLCWELVKKEGYIAIWKKPLNNNCYLSRDTGAIPPLCDPDDDPDNVWYVDLKACISRLPENGYGANVPTWPSRLHTPPDRLQSIQYESYIARKELLKAE NKFWSETIAGYVRAWHWKKFKLRNVMDMKAGFGGFAAALIDQGFDCWVLNVVPVSGSNTLPVLYDRGLLGVMHDWCEPFDTYPRTYDLLHAAGLFSVERK RCNMSTIMLEMDRILRPGGRVYIRDSLDVMDELLQIAKAMGWQATLRDTSEGPHASYRILTCDKHLLRP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39750			S-adenosyl-L-methionine-depend...		Potri.010G199300 [exp]	0	1
AT5G42470			unknown protein		Potri.005G240000 [exp]	2.00	0.7134
AT5G04460			RING/U-box superfamily protein...		Potri.010G231100 [exp]	5.09	0.7179
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.005G131200 [exp]	7.74	0.7083	XLG.1
AT4G04720		CPK21	calcium-dependent protein kina...		Potri.004G015500 [exp]	15.81	0.6734
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Potri.010G202800 [exp]	17.49	0.6756
AT4G27220			NB-ARC domain-containing disea...		Potri.001G406000 [exp]	21.67	0.6955
AT2G28250		NCRK	Protein kinase superfamily pro...		Potri.004G212600 [exp]	25.86	0.7116
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G020300 [exp]	26.22	0.6591
AT1G77600			ARM repeat superfamily protein...		Potri.002G084300 [exp]	26.55	0.6610
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.003G001000 [exp]	30.06	0.6883	Pt-ARF1.11

Compare expression of checked genes

Potri.010G199300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.