Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39740 446 / 3e-153 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) AT3G45750 129 / 1e-31 Nucleotidyltransferase family protein (.1.2) AT3G45760 105 / 3e-24 Nucleotidyltransferase family protein (.1.2) AT2G45620 92 / 1e-19 Nucleotidyltransferase family protein (.1) AT5G53770 60 / 2e-09 Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151000 [exp] 89 / 1e-18 AT2G45620 629 / 0.0 Nucleotidyltransferase family protein (.1) Potri.014G073300 [exp] 88 / 3e-18 AT2G45620 575 / 0.0 Nucleotidyltransferase family protein (.1) Potri.001G400800 [exp] 67 / 2e-11 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1) Potri.013G154900 [exp] 50 / 3e-06 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G128800 [exp] 45 / 9e-05 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.008G059301 [exp] 0 / 1 AT2G39740 0 / 1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030154 [exp] 456 / 2e-157 AT2G39740 396 / 7e-134 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10001012 [exp] 451 / 2e-155 AT2G39740 391 / 6e-132 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10015854 [exp] 89 / 1e-18 AT2G45620 661 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009310 [exp] 82 / 2e-16 AT2G45620 557 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009309 [exp] 82 / 2e-16 AT2G45620 639 / 0.0 Nucleotidyltransferase family protein (.1) Lus10008574 [exp] 66 / 5e-11 AT5G53770 552 / 0.0 Nucleotidyltransferase family protein (.1) Lus10032691 [exp] 52 / 7e-07 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1) Lus10022746 [exp] 51 / 2e-06 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 49 / 8e-06 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 48 / 2e-05 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF01909 [poplar] [flax] NTP_transf_2 Nucleotidyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.010G199500.8 pacid=42799407 polypeptide=Potri.010G199500.8.p locus=Potri.010G199500 ID=Potri.010G199500.8.v4.1 annot-version=v4.1 ATGAATACCTACAGGGTTTTGGAGCCTACACTTAAGGATATACTTAACGGGATCCAACCTTTACGGGAGGATTGGGTGGTGCGATTTAAAGTCATTGAAG AGTTGGAAGATGTTGTTAAATCTGTGGAAAGTCTGAGAGGTTCTACCGTGGAGCCATTTGGATCATTTGTGTCAAATCTCTTCACTCGATGGGGAGACTT GGATATCTCAATTGTGTTATCTAATGGTTCTTATATCTCATCTGCTGGGAAGAGGCGCAAACAAAACTTGCTAGAGGATGTTTTGAAAGCTTTGAGACAG AGAGGTGGATGGCAGAGGTTGCAATTTATCCCAAATGCAAGGGTTCCCATTTTAAAATTCGAGAATGCTTCCATCTCTTGCGATGTTTCAATTGATAACA TGCAGGGTCTAATGAAGTCCAAGTTCTTGTTCTGGATCAATGAGATAGATAGGCGTTTTCGTGATATGGTCCTACTGGTCAAGGAATGGGCCAAAACTCA CAATATAAATAATCCAAAGACTGGGTCATTGAACTCGTACTCTCTCAGTTTGCTTGTCATATTCCATTTTCAGACTTGTGTGCCTGCCATTTTACCTCCC CTTAAAGAAATTTACCCAAGAAATGTTATTGATGATCTTACAGGTGTGAGGACTGATGCAGAAAGACGTATTGGAGAAATATGTGCTGCTAATATATCTA GATATAGATCAAACAAATCCAGAGCAATTAATCGAAATTCTTTGTCTGAGCTTTTCATTTCATTCCTTACAAAGTTCTATGACATAAGTTCAAAGGCCAC AGAGCTAGGAATTTGTCCATTTACGGGGAAGTGGGAAGAAATCAGAAGCAACACGAGATGGCTGCCCAGAACTTACGCATTATTTATCGAGGATCCCTTT GAGCAGCCAGAAAATACTGCACGAGCTGTGAGTGCTGCAAACCTAATGAAGATATCTGAAGCTATTCAGACAACCCACCATAGACTTGTGACGGCTAACC AGAATCAGATTTCTTTCTTGGGCATGTTAGTCAGGCCACGAATATCACGTATTATTGCAGGAACACCAGCTAGTAACTCAAGCTATACTGCTGGTCACCA AGTCAGAATTCCAGTTGGGACCCCAAGCTACACATCTGTTCACCGTGTCAGGACTCCAGTTGGGACCTCAAGCTACATGGCTGGCCAGCATATTACAACT CGTTCACAAACTAGCAGGTCCGTGTATTCACCATCACAAGCACAGTTTCAAACTCTCAATATAAGTCCGGCAAGTCATCCCAGCAATTTGAGCTCCCAAA CTCTCAATATAAGACCGGCAAGTCATACCAGCAATTTGAGCTCCCAAAGAATGGGAAGCGGTTCAAGGAATTCTACCAATGAAAGACAGGAAAATCAGAC AATCAATTCAACCAGGCAAAGATATGTGCCACATTATCACATTCAAGGGCAGCCAGCATGGAGGCCTAAATCAGATCAATAG
AA sequence Show only first row Show all	>Potri.010G199500.8 pacid=42799407 polypeptide=Potri.010G199500.8.p locus=Potri.010G199500 ID=Potri.010G199500.8.v4.1 annot-version=v4.1 MNTYRVLEPTLKDILNGIQPLREDWVVRFKVIEELEDVVKSVESLRGSTVEPFGSFVSNLFTRWGDLDISIVLSNGSYISSAGKRRKQNLLEDVLKALRQ RGGWQRLQFIPNARVPILKFENASISCDVSIDNMQGLMKSKFLFWINEIDRRFRDMVLLVKEWAKTHNINNPKTGSLNSYSLSLLVIFHFQTCVPAILPP LKEIYPRNVIDDLTGVRTDAERRIGEICAANISRYRSNKSRAINRNSLSELFISFLTKFYDISSKATELGICPFTGKWEEIRSNTRWLPRTYALFIEDPF EQPENTARAVSAANLMKISEAIQTTHHRLVTANQNQISFLGMLVRPRISRIIAGTPASNSSYTAGHQVRIPVGTPSYTSVHRVRTPVGTSSYMAGQHITT RSQTSRSVYSPSQAQFQTLNISPASHPSNLSSQTLNIRPASHTSNLSSQRMGSGSRNSTNERQENQTINSTRQRYVPHYHIQGQPAWRPKSDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Potri.010G199500 [exp]	0	1
AT2G45910			U-box domain-containing protei...		Potri.002G160300 [exp]	2.82	0.8201
AT3G63380			ATPase E1-E2 type family prote...		Potri.002G047500 [exp]	3.16	0.8322
AT5G45500			RNI-like superfamily protein (...		Potri.011G040700 [exp]	5.47	0.7773
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Potri.002G181800 [exp]	9.53	0.7826
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.008G078900 [exp]	9.64	0.8164
AT4G27190			NB-ARC domain-containing disea...		Potri.001G435100 [exp]	10.48	0.7953
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.016G024400 [exp]	13.96	0.7122
AT5G11720			Glycosyl hydrolases family 31 ...		Potri.001G442800 [exp]	18.33	0.7236
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G107600 [exp]	19.39	0.6971	Pt-OLP.6
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Potri.005G032300 [exp]	22.97	0.7812

Compare expression of checked genes

Potri.010G199500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.