Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44920 256 / 4e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G12250 51 / 8e-08 Pentapeptide repeat-containing protein (.1.2) AT5G55000 43 / 9e-05 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058800 [exp] 313 / 1e-109 AT2G44920 253 / 1e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G112900 [exp] 51 / 2e-07 AT1G12250 363 / 1e-128 Pentapeptide repeat-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000520 [exp] 278 / 1e-95 AT2G44920 286 / 6e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10002712 [exp] 276 / 4e-95 AT2G44920 287 / 3e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10032239 [exp] 50 / 3e-07 AT1G12250 357 / 9e-125 Pentapeptide repeat-containing protein (.1.2) Lus10024602 [exp] 49 / 6e-07 AT1G12250 354 / 1e-123 Pentapeptide repeat-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0505 [poplar] [flax] Pentapeptide PF00805 [poplar] [flax] Pentapeptide Pentapeptide repeats (8 copies)
Representative CDS sequence Show only first row Show all	>Potri.010G200000.5 pacid=42799922 polypeptide=Potri.010G200000.5.p locus=Potri.010G200000 ID=Potri.010G200000.5.v4.1 annot-version=v4.1 ATGGCTCATCTTCTTAACGTTTCTTTGTGCACCAAAATCCCACCAAAACCCCCTCTCTCACTAACCAAACCTTCCCTCTCAATCCCACGCTTCCTTTCCC TCTCCCACTCTCGCTGTCCCAACCCACAGGCATTGATACTAAACAAGCAACTGCTAGAAGATTTTGCAAAGACAGGCTTGCTTGCTCTTCTCTCTGTCTC TCTCTTTTTTACTGATCCTGCTCTTGCATTCAAGGGAGGAGGACCGTATGGTTCTGAAGTTACGAGGGGCCAGGATCTTACTGGCAAGGATTTCAGTGGC AGAACTTTGATCAAGCAAGATTTTAAGACATCCATACTAAGACAAGCCAATTTCAAAGGTGCAAAGTTGTTGGGAGCTAGCTTTTTCGATGCTGATTTAA CAGGGGCTGATCTTTCAGATGCTGACCTTAGAAGTGCGGATCTCTCTTTGGCGAATGTGGCAAAGGTAAATTTGAGCAATGCTAACTTGGAAGGCGCGCT TGCTACTGGCAACACATCTTTTAGAGGATCAAATATAACAGGAGCTGATTTCACAGATGTGCCTTTGAGAGAGGACCAACGTGAGTACTTGTGCAAAGTT GCCGATGGGGTGAATCCAACTACTGGAAATGCAACACGCGATACATTGCTTTGCAACTAG
AA sequence Show only first row Show all	>Potri.010G200000.5 pacid=42799922 polypeptide=Potri.010G200000.5.p locus=Potri.010G200000 ID=Potri.010G200000.5.v4.1 annot-version=v4.1 MAHLLNVSLCTKIPPKPPLSLTKPSLSIPRFLSLSHSRCPNPQALILNKQLLEDFAKTGLLALLSVSLFFTDPALAFKGGGPYGSEVTRGQDLTGKDFSG RTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRSADLSLANVAKVNLSNANLEGALATGNTSFRGSNITGADFTDVPLREDQREYLCKV ADGVNPTTGNATRDTLLCN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44920			Tetratricopeptide repeat (TPR)...		Potri.010G200000 [exp]	0	1
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Potri.014G096500 [exp]	1.00	0.9634
AT5G15140			Galactose mutarotase-like supe...		Potri.017G080000 [exp]	2.00	0.9578
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Potri.002G206300 [exp]	2.23	0.9439
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Potri.002G077600 [exp]	2.44	0.9522
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Potri.001G253700 [exp]	2.64	0.9352
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Potri.015G121101 [exp]	3.87	0.9251
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G036600 [exp]	6.92	0.9143
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.002G154700 [exp]	8.36	0.9302	Pt-ANL2.1
AT4G19830			FKBP-like peptidyl-prolyl cis-...		Potri.012G119800 [exp]	9.16	0.9175
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.016G078600 [exp]	9.79	0.9400

Compare expression of checked genes

Potri.010G200000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.