Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55560 208 / 3e-65 AT-hook AHL15, AGF2 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) AT4G14465 188 / 1e-57 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT2G35270 180 / 1e-54 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT4G17800 179 / 3e-54 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT3G04570 177 / 3e-53 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1) AT2G42940 169 / 7e-51 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G22810 166 / 1e-48 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G12050 164 / 9e-48 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G45430 162 / 3e-47 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT1G76500 161 / 3e-47 AT-hook SOB3, AHL29 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058700 [exp] 378 / 3e-131 AT3G55560 192 / 5e-59 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.013G044500 [exp] 209 / 5e-66 AT4G14465 162 / 3e-48 AT-hook motif nuclear-localized protein 20 (.1) Potri.010G074201 [exp] 200 / 2e-62 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.014G070800 [exp] 184 / 8e-56 AT2G45430 222 / 5e-71 AT-hook motif nuclear-localized protein 22 (.1) Potri.001G142800 [exp] 184 / 9e-56 AT4G17800 300 / 6e-102 Predicted AT-hook DNA-binding family protein (.1) Potri.003G091300 [exp] 180 / 2e-54 AT4G17800 315 / 4e-108 Predicted AT-hook DNA-binding family protein (.1) Potri.001G115200 [exp] 178 / 1e-53 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1) Potri.003G116900 [exp] 178 / 2e-53 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.005G202700 [exp] 176 / 2e-53 AT2G42940 305 / 3e-105 Predicted AT-hook DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000519 [exp] 207 / 9e-65 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10002711 [exp] 207 / 1e-64 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10006577 [exp] 194 / 9e-60 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10042551 [exp] 175 / 1e-52 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1) Lus10020763 [exp] 174 / 2e-52 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10022010 [exp] 162 / 5e-48 AT4G14465 198 / 7e-63 AT-hook motif nuclear-localized protein 20 (.1) Lus10031460 [exp] 157 / 6e-47 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10015862 [exp] 158 / 5e-46 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1) Lus10009301 [exp] 158 / 8e-46 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1) Lus10031458 [exp] 145 / 2e-42 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [poplar] [flax] ALDC PF03479 [poplar] [flax] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Potri.010G200100.4 pacid=42799986 polypeptide=Potri.010G200100.4.p locus=Potri.010G200100 ID=Potri.010G200100.4.v4.1 annot-version=v4.1 ATGGCAAATCGCTGGTGGGCTGGAAATGTTGCCATGAGAGGTGTAGATCCAGTATCTTCATCTCCATCTCTTCACTTGGGAAATCTTGAAGAAGACAGCA CTCCTCCCGGTTTGAACCGGTTGGGTCCAAGAAGAGAACAGGATTTCACTGATACCAACACCAGTAGCCCTAAAACAACCACCACCGCCACACCTCCCAG TACTCAAAACCAGGAGGAACATGAAGATAGCAGAGACAACACCAACAACCAAGAATCTGGCGACCACACTGCTCTCGAAACCATTGAACCAGGCAGTGGT AGCACATCTCGCAGGCCTAGAGGCCGACCTGCTGGTTCAAAGAACAAACCAAAACCTCCCATTGTCATCACCAAAGAAAGCCCTAATTCTCTCCACAGCC ATGTCTTGGAAATCAGCTCCGGCAGTGACATCGTGGAGAGCATTGCCACTTTCTCTCATCGCCGCCATCGAGGTGTTTCTATCCTTAGCGGAAGTGGTAT TGTGAACAATGTTACTCTCAGGCAGCCTGCAGCTCCTGGTGGGGTTATCACTCTTCATGGAAGATTCGAGATTTTGTCACTGTCGGGTTCGTTTCTCCCT GCCCCATCGCCTCCAGGAGCAACGGGGCTGACTGTTTATTTGGCAGGTGGACAAGGACAGGTGGTGGGAGGTACTGTGATGGGGGAGCTGATAGCAGCAG GGCCGGTGATGGTGATTGCAGCAACGTTCAGTAATGCGACTTATGAAAGGTTGCCACTCGAGGAGCAAGAGCAAGAAGGGATGCAATTGCAACAGCAAGT GAATTCACCAGGGACTAATAATGGCAATGCTGCTGCAGGTGGTGGTGCCAGTAGCGGTGGCGGTAATAATTCAGTGACTCAATCTTCTCAGGGTTTAGGT GAGCATGTTTCAATCCCTGGGTACAATTTGCCTCCTAATTTGTTACCTAATGGACAAGTGCCACATGATATGTTTTGGTGTCCCCCTCCCCGCCCTCCCC CCTCTTACTAA
AA sequence Show only first row Show all	>Potri.010G200100.4 pacid=42799986 polypeptide=Potri.010G200100.4.p locus=Potri.010G200100 ID=Potri.010G200100.4.v4.1 annot-version=v4.1 MANRWWAGNVAMRGVDPVSSSPSLHLGNLEEDSTPPGLNRLGPRREQDFTDTNTSSPKTTTTATPPSTQNQEEHEDSRDNTNNQESGDHTALETIEPGSG STSRRPRGRPAGSKNKPKPPIVITKESPNSLHSHVLEISSGSDIVESIATFSHRRHRGVSILSGSGIVNNVTLRQPAAPGGVITLHGRFEILSLSGSFLP APSPPGATGLTVYLAGGQGQVVGGTVMGELIAAGPVMVIAATFSNATYERLPLEEQEQEGMQLQQQVNSPGTNNGNAAAGGGASSGGGNNSVTQSSQGLG EHVSIPGYNLPPNLLPNGQVPHDMFWCPPPRPPPSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55560	AT-hook	AHL15, AGF2	AT-hook motif nuclear-localize...		Potri.010G200100 [exp]	0	1
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.007G024400 [exp]	6.78	0.9231
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.018G003800 [exp]	13.92	0.9225
AT1G22170			Phosphoglycerate mutase family...		Potri.005G168000 [exp]	21.35	0.8728
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.018G058800 [exp]	22.44	0.9042
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.018G070900 [exp]	22.44	0.9199
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.007G025900 [exp]	24.97	0.9081
					Potri.002G101101 [exp]	27.20	0.9000
AT5G54000			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121800 [exp]	27.96	0.9014
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.004G185100 [exp]	30.44	0.9075
AT2G35910			RING/U-box superfamily protein...		Potri.010G243400 [exp]	31.63	0.9033

Compare expression of checked genes

Potri.010G200100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.