Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74260 2285 / 0 PUR4 purine biosynthesis 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058600 [exp] 1915 / 0 AT1G74260 1642 / 0.0 purine biosynthesis 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012890 [exp] 2367 / 0 AT1G74260 2323 / 0.0 purine biosynthesis 4 (.1) Lus10030542 [exp] 2355 / 0 AT1G74260 2303 / 0.0 purine biosynthesis 4 (.1) Lus10004706 [exp] 2288 / 0 AT1G74260 2253 / 0.0 purine biosynthesis 4 (.1) Lus10040273 [exp] 940 / 0 AT1G74260 921 / 0.0 purine biosynthesis 4 (.1) Lus10040272 [exp] 390 / 5e-125 AT1G74260 366 / 1e-116 purine biosynthesis 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02769 [poplar] [flax] AIRS_C AIR synthase related protein, C-terminal domain CL0014 [poplar] [flax] Glutaminase_I PF13507 [poplar] [flax] GATase_5 CobB/CobQ-like glutamine amidotransferase domain
Representative CDS sequence Show only first row Show all	>Potri.010G200200.2 pacid=42798385 polypeptide=Potri.010G200200.2.p locus=Potri.010G200200 ID=Potri.010G200200.2.v4.1 annot-version=v4.1 ATGGCGGGTGCTCGAGAAATTACAGCAGCAACAGAATTCTTGCGTGGCACTCATAGGCAGTCTCTGTTTGTACACGGAGACTTGCCTATTAATCGACGAA ACCAGTTGCTGTGGGGGACGCTTCGTAATCATAAGATTGCATTTGGTGTATCTAATAAAAGGGGTGTTTCGTTGAGATGTCGTGCTCAATCAAAGCCTAG AGCTTTCGTTTCCGGGGCTGGGACGAGTTCTGTTGATGAGCAATCAAGTTTTATTGAAAAGCCTGTGCAAGAACTAATTCATTTCTATCGCATTCCATTG ATTCAAGAGAGTGCAACTCTTGAAATACTTAAGTCTGCTCAAACGAAAGTTTCAAACAAGATTGTTGGTTTACAAACTGAGCAGTGTTTTAATATCGGTA TTCAGTCTGGGGTCTCAAGCCAGAAGCTGGGGTGTCTTAGGTGGCTTCTCCAAGAAACTTATGAGCCAGAGAATTTGGGGACTGAAAGCTTTCTCGAGAA GAAGACGAAGGAAGGAGTGAATGCTGTGATAGTTGAGGTTGGGCCTAGATTGTCTTTTACCACAGCTTGGTCTGCTAATGCTGTATCAATTTGCCGTGCT TGTGGGTTGACGGAGGTGACTAGACTGGAACGGTCAAGAAGGTACTTGTTGTACAGTAAAGGCGTGTTGCCAGATTATCAAATCAATGAGTTTGCTGCAA TGGTTCATGATCGGATGACTGAGTGTGTTTATACGCAGAAGCTAATGTCTTTTGATGCCAGTGTAGTTCCAGAGGAAGTTCGACATGTTCCTGTTATGGA GAGGGGGAGAAAAGCGTTGGAGGAGATCAATCAGGAGATGGGGCTTGCTTTTGATGAGCAAGATTTACAGTATTATACTAGGTTGTTCAGGGAGGACATC AAGCGGAATCCGACAACTGTGGAATTGTTTGACATTGCACAGTCTAATAGCGAGCACAGCAGGCACTGGTTTTTCACTGGGAAGATTGTTATAGATGGAC AGCCCATGGATAGAACTCTTATGCAGATCGTAAAGAGCACTTTGCAGGTGAATCCAAATAATTCTGTCATTGGTTTCAAGGACAACTCGAGTGCAATCAA AGGCTTCCCTGTAAAGCAATTGCGGCCAGTTCAGCCTGGCTTGACATGCCCCTTAAATGTAATTGACCGTGACCTTGATATTTTATTTACAGCTGAAACT CATAATTTCCCATGTGCAGTGGCACCTTACCCCGGGGCAGAGACCGGTGCAGGGGGTCGAATCAGGGATACACATGCAACAGGTAGGGGGTCATTTGTTG TTGCATCTACAGCTGGTTACTGTGTTGGGAATCTGAACATTGAGGGGTCTTATGCCCCATGGGAAGATAATTCTTTCGCATACCCATCAAACTTGGCATC ACCTTTGCAGATTCTTATTGATGCTAGCAATGGCGCATCAGATTATGGAAACAAATTTGGGGAGCCCTTGATTCAGGGCTACACTAGAACTTTCGGGATG CGACTTCCTAGTGGGGAGAGGCGGGAATGGTTGAAGCCAATTATGTTCAGTGGAGGCATTGGGCAAATTGATCACACCCACATAACGAAAGGGGAACCTG ATATTGGCATGCTGGTTGTAAAGATTGGAGGTCCTGCTTATCGAATTGGAATGGGAGGTGGGGCTGCATCAAGCATGGTGAGTGGCCAGAATGATGCAGA TCTTGACTTTAATGCTGTACAGCGTGGAGATGCTGAGATGGCACAGAAACTGTATCGTGTTGTTCGTTCCTGCATCGAGATGGGTGAGGGCAATCCAATC ATCAGTATCCATGATCAGGGAGCTGGTGGTAACTGTAATGTTGTTAAGGAAATTATATATCCAAAGGGTGCTCAAATTGACATCAGGGCAATTGTTATTG GTGATCACACAATGTCTGTTTTGGAGATTTGGGGCGCAGAGTATCAGGAGCAAGATGCAATTTTGGTGAAGGCTGAAAGCCGTGACCTCTTACAATCAAT CTGCAAAAGGGAAAGGGTGTCGATGGCTGTTATTGGAACAATTAGTGGTGAGGGACGTGTTGTTTTGGTTGATAGTTCAGCTATTGAGAAATGTCGTGCA AATGGACTCCCTCCTCCTCCTCCTGCTGTGGATCTTGAGCTTGAGAAAGTTCTTGGGGACATGCCTCAGAAAAGTTTTGAGTTTCATCGGGTGGTTCCAG CACGAGAGCCACTTGATATTGCTCCAGGGATCACTGTGATGGATGCTTTAAAGAGAGTATTAAGACTTCCATCTGTATGTTCGAAACGTTTCCTGACAAC AAAAGTGGATAGGTGTGTCACAGGTCTTGTAGCACAACAGCAAACTGTTGGTCCTTTGCAGATTACACTTGCTGATGTTGCTGTCATTGCTCAGACTTAC ACTGACTTGACTGGAGGTGCCTGTGCCATCGGGGAACAACCTATCAAAGGTCTGGTTAATCCGAAGGCAATGGCCAGACTGGCTGTTGGAGAAGCTCTCA CTAATCTGGTTTGGGCAAAGGTTACTTCTCTTTCTGATGTCAAGGCAAGTGGGAATTGGATGTACGCTGCCAAGCTGGATGGGGAAGGAGCTGACATGTA TGATGCTGCCACAGCTCTTTCAGAAGCTATGATTGAACTTGGCATTGCTATTGATGGGGGCAAGGACAGTCTTTCCATGGCAGCCCATGCAGGTGGTGAG GTTGTTAAGGCCCCGGGAAATCTTGTCATCAGTGCATATGTCACTTGCCCTGACATAACAAAAACAGTAACCCCTGATCTGAAGCTAGGAGATGAGGGTG TACTGCTTCACATTGATTTGGCCAAGGGAAAGAGACGGCTGGGTGGATCTGCTCTTGCTCAGGCTTTTGGCCAAGTTGGTGATGACTGCCCAGACCTTGA CGATGTTTCTTACCTGAAAAAAACTTTTGAGAGTGTCCAGGATCTTATTTCAGACGAAATAATCTCTTCTGGCCATGATATTAGTGATGGTGGGCTACTT GTCTGTGCCCTGGAGATGGCATTTGCTGGGAATTGTGGTATTCTTTTGGACTTGACTTCGAAAAGGGAGAGCCACTTTGAAACATTCTTTGCAGAAGAGC TTGGTCTTGTTCTTGAAGTTAGCAGAAAGAACTTGGATATTGTAATGCAAAAGCTCTACAGTGCTGGGGTTTCTGGCGAGATCATTGGACAAGTGACTGC CTCACCCTTGATAGAATTGAAAGTTGATGGGGTCACTTGTTTGAAGGAGGAAACCTCTTTCCTTAGAGACACTTGGGAGGAAACCAGTTTCCATCTGGAG AAGTTTCAAAGATTAGCTTCTTGTGTGGACTTAGAGAAGGAAGGTTTGAAGTCTAGGCATGAACCTACCTGGAGAATGTCCTTCACTCCTTCCTTTACAG ATGAGAAATATATGATTGCAACTTCGAAACCAAAAGTAGCTGTCATTCGAGAGGAAGGTAGCAATGGAGATAGAGAGATGTCTGCAGCTTTTTATGCTGC TGGTTTTGAACCCTGGGATATTACAATGTCAGACCTTCTGAATGGAGTTATCTCTCTATGTGATTTCCGCGGTATTGTGTTTGTGGGTGGCTTTAGCTAT GCCGACGTGCTTGATTCTGCAAAAGGCTGGTCTGCTTCCATACGATTTAACCAGCCTCTTTTGAATCAATTTCAAGAGTTTTATAGGCGGCCAGATACTT TTAGTCTTGGTGTTTGCAATGGGTGTCAGCTCATGGCTCTATTGGGGTGGGTCCCAGGCCCCCAAGTTGGGGGTGTGTTTGGTGCTGGAGGGGACCCAGC ACAACCAAGGTTTGTTCACAATGAATCTGGTCGGTTTGAATGCCGCTTTACAAGTGTGACAATAGAGGACTCGCCTGCTATCATGTTCAAAGGAATGGAG GGCAGCACATTGGGTGTATGGGCTGCTCATGGTGAGGGAAGAGCATATTTTCCTGATGATGGCGTTCTTGATGGAGTGATTCATTCAAACTTGGCCCCAG TAAGATATTGTGATGATGATGGGAATCCAACAGAAGTTTACCCTTTCAATGTCAATGGCTCTCCTTTAGGAGTCGCAGCAATTTGTTCTCCTGATGGGAG GCATCTTGCAATGATGCCTCATCCTGAGCGTTGCTTCTTGATGTGGCAATTCCCTTGGTACCCCACACAGTGGAATGTGGACAAGAAAGGCCCTAGCCCA TGGTTAAAGATGTTCCAGAATGCCAGAGAATGGTGCTCTTGA
AA sequence Show only first row Show all	>Potri.010G200200.2 pacid=42798385 polypeptide=Potri.010G200200.2.p locus=Potri.010G200200 ID=Potri.010G200200.2.v4.1 annot-version=v4.1 MAGAREITAATEFLRGTHRQSLFVHGDLPINRRNQLLWGTLRNHKIAFGVSNKRGVSLRCRAQSKPRAFVSGAGTSSVDEQSSFIEKPVQELIHFYRIPL IQESATLEILKSAQTKVSNKIVGLQTEQCFNIGIQSGVSSQKLGCLRWLLQETYEPENLGTESFLEKKTKEGVNAVIVEVGPRLSFTTAWSANAVSICRA CGLTEVTRLERSRRYLLYSKGVLPDYQINEFAAMVHDRMTECVYTQKLMSFDASVVPEEVRHVPVMERGRKALEEINQEMGLAFDEQDLQYYTRLFREDI KRNPTTVELFDIAQSNSEHSRHWFFTGKIVIDGQPMDRTLMQIVKSTLQVNPNNSVIGFKDNSSAIKGFPVKQLRPVQPGLTCPLNVIDRDLDILFTAET HNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNIEGSYAPWEDNSFAYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGM RLPSGERREWLKPIMFSGGIGQIDHTHITKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDADLDFNAVQRGDAEMAQKLYRVVRSCIEMGEGNPI ISIHDQGAGGNCNVVKEIIYPKGAQIDIRAIVIGDHTMSVLEIWGAEYQEQDAILVKAESRDLLQSICKRERVSMAVIGTISGEGRVVLVDSSAIEKCRA NGLPPPPPAVDLELEKVLGDMPQKSFEFHRVVPAREPLDIAPGITVMDALKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQITLADVAVIAQTY TDLTGGACAIGEQPIKGLVNPKAMARLAVGEALTNLVWAKVTSLSDVKASGNWMYAAKLDGEGADMYDAATALSEAMIELGIAIDGGKDSLSMAAHAGGE VVKAPGNLVISAYVTCPDITKTVTPDLKLGDEGVLLHIDLAKGKRRLGGSALAQAFGQVGDDCPDLDDVSYLKKTFESVQDLISDEIISSGHDISDGGLL VCALEMAFAGNCGILLDLTSKRESHFETFFAEELGLVLEVSRKNLDIVMQKLYSAGVSGEIIGQVTASPLIELKVDGVTCLKEETSFLRDTWEETSFHLE KFQRLASCVDLEKEGLKSRHEPTWRMSFTPSFTDEKYMIATSKPKVAVIREEGSNGDREMSAAFYAAGFEPWDITMSDLLNGVISLCDFRGIVFVGGFSY ADVLDSAKGWSASIRFNQPLLNQFQEFYRRPDTFSLGVCNGCQLMALLGWVPGPQVGGVFGAGGDPAQPRFVHNESGRFECRFTSVTIEDSPAIMFKGME GSTLGVWAAHGEGRAYFPDDGVLDGVIHSNLAPVRYCDDDGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPERCFLMWQFPWYPTQWNVDKKGPSP WLKMFQNAREWCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Potri.010G200200 [exp]	0	1
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Potri.010G023100 [exp]	1.00	0.9330	Pt-CARB.1
AT1G30680			toprim domain-containing prote...		Potri.001G461300 [exp]	4.47	0.8981
AT2G18410			unknown protein		Potri.004G099000 [exp]	8.83	0.8602
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.001G369900 [exp]	10.67	0.9053
AT4G20020			unknown protein		Potri.003G015100 [exp]	10.95	0.8932
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	13.52	0.9020
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Potri.001G072800 [exp]	15.09	0.8910	Pt-TOC75.2
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Potri.009G103700 [exp]	16.43	0.8678
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G177400 [exp]	16.73	0.8697
AT1G73090			unknown protein		Potri.010G250100 [exp]	18.76	0.8798

Compare expression of checked genes

Potri.010G200200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.