Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LBD33.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06080 152 / 1e-46 AS2 LBD33 LOB domain-containing protein 33 (.1) AT3G58190 150 / 2e-45 AS2 LBD29, ASL16 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) AT2G42440 145 / 4e-43 AS2 Lateral organ boundaries (LOB) domain family protein (.1) AT2G42430 138 / 3e-40 AS2 ASL18, LBD16 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) AT2G45420 133 / 4e-38 AS2 LBD18, ASL20 LOB domain-containing protein 18 (.1) AT2G31310 130 / 4e-38 AS2 LBD14 LOB domain-containing protein 14 (.1) AT3G03760 132 / 8e-38 AS2 LBD20 LOB domain-containing protein 20 (.1) AT4G00210 128 / 8e-37 AS2 LBD31 LOB domain-containing protein 31 (.1) AT4G00220 120 / 2e-33 AS2 JLO, LBD30, ASL19 LOB DOMAIN-CONTAINING PROTEIN 30, JAGGED LATERAL ORGANS, Lateral organ boundaries (LOB) domain family protein (.1) AT2G45410 112 / 8e-31 AS2 LBD19 LOB domain-containing protein 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041100 [exp] 145 / 3e-43 AT2G42440 186 / 6e-59 Lateral organ boundaries (LOB) domain family protein (.1) Potri.002G041200 [exp] 142 / 3e-42 AT2G42430 191 / 6e-61 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Potri.005G221900 [exp] 141 / 6e-42 AT2G42430 209 / 3e-68 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Potri.002G149000 [exp] 135 / 4e-39 AT2G45420 234 / 2e-77 LOB domain-containing protein 18 (.1) Potri.014G070400 [exp] 134 / 7e-39 AT2G45420 237 / 2e-78 LOB domain-containing protein 18 (.1) Potri.013G064501 [exp] 129 / 6e-37 AT3G03760 209 / 1e-67 LOB domain-containing protein 20 (.1) Potri.014G070300 [exp] 125 / 5e-36 AT4G00210 181 / 5e-58 LOB domain-containing protein 31 (.1) Potri.002G148900 [exp] 120 / 7e-34 AT4G00210 186 / 2e-59 LOB domain-containing protein 31 (.1) Potri.003G149000 [exp] 106 / 8e-29 AT1G31320 241 / 2e-82 LOB domain-containing protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004707 [exp] 197 / 4e-64 AT5G06080 154 / 1e-47 LOB domain-containing protein 33 (.1) Lus10040274 [exp] 149 / 1e-45 AT5G06080 127 / 1e-37 LOB domain-containing protein 33 (.1) Lus10033873 [exp] 146 / 1e-43 AT3G58190 220 / 1e-72 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) Lus10000613 [exp] 145 / 2e-43 AT3G58190 215 / 1e-70 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) Lus10000707 [exp] 135 / 4e-39 AT2G42430 222 / 2e-72 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10033872 [exp] 135 / 4e-39 AT2G42430 212 / 6e-69 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10014757 [exp] 130 / 5e-37 AT2G42430 208 / 2e-67 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10024877 [exp] 130 / 8e-37 AT2G42430 211 / 6e-68 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10009298 [exp] 114 / 4e-31 AT2G45410 193 / 2e-62 LOB domain-containing protein 19 (.1) Lus10040638 [exp] 107 / 7e-29 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [poplar] [flax] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Potri.010G200400.1 pacid=42797724 polypeptide=Potri.010G200400.1.p locus=Potri.010G200400 ID=Potri.010G200400.1.v4.1 annot-version=v4.1 ATGACAGGGCTGGGCTCTTCGTGCGGAGCATGCAAATTCCTGCGAAGAAAGTGCACAAGCGAATGTGTGTTTGCACCGTATTTCTGTTATGACCAGGCTG CAGCCCACTTTGCCGCAGTGCACAAAGTGTTTGGTGCAAGCAATGTTTCAAAGCTATTATTGCACCTACCAGTACACAATCGAGGCGATGCTGCTATCAC CATATCTTATGAAGCACTGGCTAGGATGCGAGATCCTATATATGGCTGCGTTGCTCATATCTTCGCACTGCAACAACAGGTTGCCAGCTTACAAGAGGAG ATAGAAATCCTTGAGAACCAGATGGCTAGTCTCACAGTTGGTGTCGCCGGTTTTGGAAGTTCGCCAACAATCTCAAACCCGAACTGTGAGATGCTGTTTT CCTTCCAACAAGATGCCATGAACACACAATATTACCAGAATCCACAATCTGCACAGCTAAACCATTCAGGATATACAACTGGGAACCAAACTTTTGATGG CCAGATGAACGTGCCACTTACTCCTTTATATGGATGGGAAGACCAAGACATTTTTTGCAACTCTCACCCACGTCCTTTAGAGAGACTCCTCGAGGAAGTT GACAAAGAGATCTTCACATATTGTTCATGGCCGGACAGCGGAAACATCATCATATGA
AA sequence Show only first row Show all	>Potri.010G200400.1 pacid=42797724 polypeptide=Potri.010G200400.1.p locus=Potri.010G200400 ID=Potri.010G200400.1.v4.1 annot-version=v4.1 MTGLGSSCGACKFLRRKCTSECVFAPYFCYDQAAAHFAAVHKVFGASNVSKLLLHLPVHNRGDAAITISYEALARMRDPIYGCVAHIFALQQQVASLQEE IEILENQMASLTVGVAGFGSSPTISNPNCEMLFSFQQDAMNTQYYQNPQSAQLNHSGYTTGNQTFDGQMNVPLTPLYGWEDQDIFCNSHPRPLERLLEEV DKEIFTYCSWPDSGNIII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Potri.010G200400 [exp]	0	1	LBD33.1
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Potri.018G046800 [exp]	3.46	0.7439
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.017G000100 [exp]	4.24	0.6889
AT1G06330			Heavy metal transport/detoxifi...		Potri.002G005300 [exp]	9.16	0.7399
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G007300 [exp]	9.16	0.6944
AT4G36470			S-adenosyl-L-methionine-depend...		Potri.007G021400 [exp]	10.00	0.6386
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Potri.013G152400 [exp]	11.22	0.6809	Pt-XTH9.2
AT2G28790			Pathogenesis-related thaumatin...		Potri.009G028800 [exp]	11.48	0.7322
AT3G57062			unknown protein		Potri.006G041600 [exp]	11.61	0.7200
AT5G64730			Transducin/WD40 repeat-like su...		Potri.001G306500 [exp]	12.00	0.6925
AT5G65140		TPPJ	trehalose-6-phosphate phosphat...		Potri.005G077200 [exp]	14.42	0.7119

Compare expression of checked genes

Potri.010G200400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.