Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02140 338 / 1e-117 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 221 / 1e-72 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G73620 217 / 1e-70 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 212 / 1e-68 ATLP-3 thaumatin-like protein 3 (.1) AT4G38660 211 / 2e-67 Pathogenesis-related thaumatin superfamily protein (.1.2) AT5G24620 207 / 5e-65 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G19320 202 / 5e-65 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75050 199 / 6e-64 Pathogenesis-related thaumatin superfamily protein (.1) AT4G24180 197 / 1e-62 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G77700 197 / 1e-61 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G088100 [exp] 332 / 6e-116 AT5G02140 375 / 4e-132 Pathogenesis-related thaumatin superfamily protein (.1) Potri.012G047800 [exp] 216 / 3e-70 AT1G73620 379 / 3e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.015G039200 [exp] 216 / 3e-70 AT1G73620 352 / 1e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.015G000800 [exp] 216 / 1e-69 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.014G040700 [exp] 204 / 9e-66 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1) Potri.012G004800 [exp] 207 / 1e-65 AT5G24620 358 / 1e-122 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G173900 [exp] 202 / 1e-64 AT1G77700 316 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) Potri.017G075500 [exp] 197 / 8e-63 AT5G40020 355 / 1e-124 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020400 [exp] 199 / 1e-62 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003962 [exp] 332 / 4e-116 AT5G02140 387 / 4e-137 Pathogenesis-related thaumatin superfamily protein (.1) Lus10023785 [exp] 321 / 3e-111 AT5G02140 379 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10009058 [exp] 221 / 3e-72 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10015705 [exp] 203 / 3e-65 AT1G75030 256 / 6e-86 thaumatin-like protein 3 (.1) Lus10028448 [exp] 204 / 5e-65 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025055 [exp] 202 / 2e-64 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 202 / 4e-64 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10037483 [exp] 201 / 3e-63 AT1G75030 242 / 3e-79 thaumatin-like protein 3 (.1) Lus10017266 [exp] 199 / 1e-62 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10032726 [exp] 196 / 3e-62 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.010G200800.1 pacid=42798557 polypeptide=Potri.010G200800.1.p locus=Potri.010G200800 ID=Potri.010G200800.1.v4.1 annot-version=v4.1 ATGTCAACTTCTTCTCATCAGTTTCTTCTCTTCTTCCTTTGCATGATCATCTCCCTTTCCATCACAGATGGGACTGAACTCATTATAGCAAACAACTGCA AGGACAGCGTATGGCCTGGGATCCTTGGCACTGCAGGCCATGTGACCCCCAGAGAAGGCGGCTTCCTTCTACTCAGCGGCGAACAAACAGTCCTCCAAGT CCCTGACAAGTGGTCAGGAAGAATTTGGCCAAGACAAGGTTGCTGTTTTGATGAAACCACTGGCAGAGGTTCATGCCAGACCGGAGACTGTGCCGGCCTT TTACAGTGTAGAGGCGTTGGTGGTGTCCCTCCAGCAACTTTAGTGGAAATGACACTTGGAACTTCAGAATCCGCCTTGCATTACTATGATGTGAGTTTGG TTGATGGATTTAATGTTCCAGTTTCTATGATGCCTGTTGGTGGTGGTGCAGGGTGTGGAATTGCCGCGTGTGAGACGGATCTGAATGTCTGTTGCCCTTC TACATTGGTTGTGAAGCGACAGGGGAAGGTGGTGGGTTGCAAGAGTGCATGCTTGGCTGCAAAAACTGATAGATATTGTTGTACTGGGGAGTATGCAAAT CCTAAAAGTTGCAAGCCTACTATTTTTAGTCATCTTTTTAAGGCAATTTGTCCCAAGGCTTATAGCTTTGCCTTTGATGATGCTTCAGGGCTTAAGACTT GTAAGGCTTCTCGGTATGCTATTACCTTTTGTCCTCCTAATTGA
AA sequence Show only first row Show all	>Potri.010G200800.1 pacid=42798557 polypeptide=Potri.010G200800.1.p locus=Potri.010G200800 ID=Potri.010G200800.1.v4.1 annot-version=v4.1 MSTSSHQFLLFFLCMIISLSITDGTELIIANNCKDSVWPGILGTAGHVTPREGGFLLLSGEQTVLQVPDKWSGRIWPRQGCCFDETTGRGSCQTGDCAGL LQCRGVGGVPPATLVEMTLGTSESALHYYDVSLVDGFNVPVSMMPVGGGAGCGIAACETDLNVCCPSTLVVKRQGKVVGCKSACLAAKTDRYCCTGEYAN PKSCKPTIFSHLFKAICPKAYSFAFDDASGLKTCKASRYAITFCPPN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02140			Pathogenesis-related thaumatin...		Potri.010G200800 [exp]	0	1
AT2G35585			unknown protein		Potri.010G101500 [exp]	9.59	0.8845
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G061600 [exp]	14.07	0.8712
					Potri.005G184450 [exp]	14.79	0.8456
AT1G58170			Disease resistance-responsive ...		Potri.016G060900 [exp]	14.83	0.8396
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Potri.011G046700 [exp]	20.49	0.7641	NAC002
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Potri.016G129700 [exp]	21.14	0.7364
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.011G149000 [exp]	22.60	0.8336
AT2G19090			Protein of unknown function (D...		Potri.006G077000 [exp]	29.15	0.7858
AT1G09750			Eukaryotic aspartyl protease f...		Potri.002G104600 [exp]	30.00	0.8126
AT3G25560		NIK2	NSP-interacting kinase 2 (.1.2...		Potri.010G134100 [exp]	30.74	0.8242

Compare expression of checked genes

Potri.010G200800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.