Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21420 288 / 4e-95 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 261 / 9e-85 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17020 252 / 3e-81 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G17010 248 / 1e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 242 / 2e-77 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 242 / 2e-77 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 234 / 2e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 225 / 1e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G49390 216 / 2e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 217 / 4e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201000 [exp] 607 / 0 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 282 / 6e-93 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G025900 [exp] 263 / 2e-85 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355100 [exp] 260 / 3e-84 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G382400 [exp] 251 / 9e-81 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 248 / 2e-79 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.006G101100 [exp] 235 / 1e-74 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 231 / 7e-73 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 230 / 1e-72 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006518 [exp] 271 / 2e-88 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030934 [exp] 259 / 7e-84 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10011980 [exp] 257 / 3e-83 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011979 [exp] 256 / 7e-83 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10030995 [exp] 253 / 1e-81 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10011981 [exp] 253 / 2e-81 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10040112 [exp] 253 / 2e-81 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10015252 [exp] 252 / 3e-81 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10026173 [exp] 251 / 1e-80 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10022292 [exp] 245 / 2e-78 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.010G200900.1 pacid=42797070 polypeptide=Potri.010G200902.1.p locus=Potri.010G200900 ID=Potri.010G200900.1.v4.1 annot-version=v4.1 ATGGATCCAAAAGTCGAAAATGGAGCAATGCAGGGAGATGAGGTGCCGACTTGGGGAAAATCTTTGCCAGTGCCAAGTGTTCAAGAAATGGTAAGAAAAG ATCATCAATTTCTCTCTGAAAGATACATACAAGAACACAAAGACAGGGCAGTAGCTACTAATTTATCTCCAACTACCTCGGAAATTCCAATCATAAACTT CTCCTTGCTAATCAATGGAGACAAAGATGAACGGAGAAAGCTAGATACTGCTTGCAAGGAGTGGGGTTTCTTTCAGATAACAAACCATGGTGTCCCAGAA AAGGTGTTAAAGAAAATGAAAGCTGCTGTGGCAGCATTTTATGAACTTCCACTGGAAGAGAAAAGCAAGTACGCAATGGCAGCGGATGATATTCAAGGAT ATGGCCAAGTCTATGTAGTCTCTGAGCATCAAAAACTCGATTGGTGTGACATAATGGTCTTGATGACACTCCCGCCCGAATACAAGAAAATGAAATACTG GCCGGTTGCAATATCAGAGGCAGTACAAGAGTACACAACAGAAACACTTAAGCTGGCTGAGGAGATCTTTGCCAACATCTCTTTGTTAATGGGAATGGAT AAAGATGCCTTAAAACGGTTGCATGGGAAGATCATGAAGCAAGCAATTCGAATGAACTACTATCCAACCTGCTCGAGGCCTGATCTTGTGCTTGGTGTTA GTCCACATTCTGATACAAGCACCATAACCTTACTTCTCCAGGATGATGATATCACTGGTCTCCAGATACGGCACAGGGAAGGATGGGTTCCTGTGAAACC AATTCCAAATGCTATAGTAGCAAATATTGGTGATGTTATTGAGGGTTGGAGCAATGGAGTGTACAAAAGCATTGAGCACAGAGCGGTGACGAATGTGACA GCGGCAAGAATGTCCGTTGCAACATTTGTGATCCCAGATGACGACGTGGAACTAGGTCCAGTGGAGACAATGGTGGATGATTATAATCGCCCTGTAATGT ACAAAAGCATCAAGTATGGCGATTACCTCAGATATACTTTTTCAAAGAAAATGGATGGAAAAGCCAACACCGAGCTTCTCAAAGCTGGAAACGAAAGCAT TTGA
AA sequence Show only first row Show all	>Potri.010G200900.1 pacid=42797070 polypeptide=Potri.010G200902.1.p locus=Potri.010G200900 ID=Potri.010G200900.1.v4.1 annot-version=v4.1 MDPKVENGAMQGDEVPTWGKSLPVPSVQEMVRKDHQFLSERYIQEHKDRAVATNLSPTTSEIPIINFSLLINGDKDERRKLDTACKEWGFFQITNHGVPE KVLKKMKAAVAAFYELPLEEKSKYAMAADDIQGYGQVYVVSEHQKLDWCDIMVLMTLPPEYKKMKYWPVAISEAVQEYTTETLKLAEEIFANISLLMGMD KDALKRLHGKIMKQAIRMNYYPTCSRPDLVLGVSPHSDTSTITLLLQDDDITGLQIRHREGWVPVKPIPNAIVANIGDVIEGWSNGVYKSIEHRAVTNVT AARMSVATFVIPDDDVELGPVETMVDDYNRPVMYKSIKYGDYLRYTFSKKMDGKANTELLKAGNESI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G200900 [exp]	0	1
AT1G77640	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G085600 [exp]	1.41	0.9421	DREB41
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Potri.005G176000 [exp]	1.41	0.9372	DREB39
AT5G43066			unknown protein		Potri.014G022000 [exp]	2.00	0.9166
					Potri.017G045000 [exp]	5.47	0.9014
AT5G25810	AP2_ERF	TNY, TINY	TINY, Integrase-type DNA-bindi...		Potri.019G067400 [exp]	5.74	0.8673
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156833 [exp]	12.00	0.8118
AT1G68450		PDE337	PIGMENT DEFECTIVE 337, VQ moti...		Potri.006G199300 [exp]	15.49	0.8442
AT3G14470			NB-ARC domain-containing disea...		Potri.017G133600 [exp]	17.60	0.8691
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Potri.015G093800 [exp]	18.33	0.8540
					Potri.001G297101 [exp]	20.39	0.8941

Compare expression of checked genes

Potri.010G200900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.