Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11430 720 / 0 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 716 / 0 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT2G38110 429 / 9e-147 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT1G01610 400 / 2e-135 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT4G00400 394 / 4e-133 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT1G06520 390 / 3e-130 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT3G11325 346 / 8e-116 Phospholipid/glycerol acyltransferase family protein (.1) AT1G02390 325 / 9e-106 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT4G01950 313 / 2e-101 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058200 [exp] 831 / 0 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.016G063900 [exp] 477 / 2e-165 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 476 / 5e-165 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 457 / 7e-158 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 452 / 5e-156 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.005G202200 [exp] 407 / 1e-137 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.014G085500 [exp] 394 / 4e-133 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.002G192600 [exp] 330 / 3e-107 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004711 [exp] 702 / 0 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Lus10010741 [exp] 451 / 4e-155 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 441 / 5e-151 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 419 / 1e-142 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10020767 [exp] 405 / 3e-137 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10010934 [exp] 394 / 6e-132 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 379 / 3e-126 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10017794 [exp] 321 / 2e-105 AT3G11430 392 / 5e-133 glycerol-3-phosphate acyltransferase 5 (.1) Lus10018832 [exp] 321 / 2e-105 AT3G11430 390 / 3e-132 glycerol-3-phosphate acyltransferase 5 (.1) Lus10004833 [exp] 320 / 5e-105 AT2G38110 512 / 3e-180 glycerol-3-phosphate acyltransferase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.010G201200.1 pacid=42798409 polypeptide=Potri.010G201200.1.p locus=Potri.010G201200 ID=Potri.010G201200.1.v4.1 annot-version=v4.1 ATGGATGCAGTTGTTTCAGAGCTCGAAGGAACTCTTCTCAAAGACCGAGACCCCTTTTCTTATTTTATGTTAGTAGCATTTGAGGCATCGGGTTTGCTTC GCTTTGCCTTGTTATTGATTTTTTGGCCTGTGATTTGGTTACTAGAGATGTTAGGGATGGGAGAGTATGGGCTCAAACTAGTGGTCTTCGTTGCCACTGC GGGTGTTAGTGAATCGGAGATTGAGTCGGTAGCAAGAGCCGTTTTACCAAAGTTTTACATGGATGATATTGACATGGAGGCTTGGAAAGTGTTTAGCTCA TATGATAAAAGAGTTGTGGTGACTAAAATGCCAAGGATCATGGTAGAAAGGTTTGTGAAGGAGCATCTGAGAGCCGATGAGGTTATTGGGAGTGAACTTG TGATAAGCCGGTTTGGGTTCGCCACTGGATTTGTCAAGGGCAACACTATTGATTCTTATATCTCGATTCGTGTCGCCAAACTATTTATCGATGAAAAGCC TGGTCTTGGACTAGGGACGATTACTTCTTCTTTCCTATCCCTATGCAAGGAACAAATACATCCCCCATTCATGGCCAATCAAAACCAATATGATCACCAG CTCGTCCGCCCTCTCCCTGTAATCTTTCATGATGGCCGCCTGGTCAAGCGCCCAACACCATCCACGGCTCTCCTAATCATCCTCTGGATGCCACTAGGCA TCATACTTGCAACAATCCGAATTCTAGTGGGAGTAATGTTACCGATGTGGGCTAAACCTTACTTGTCCAGAGTATTGGGTGGCAAAGTCATTGTCAAAGG CAAGCCACCACCGCCTGCGTCCGGTGGCAATAGTGGTGTGCTATTTGTTTGCACGCATCGAACTCTAATGGACCCTGTTGTCCTATCCACGGTGCTAAGG CGTAAAATCCCAGCAGTCACATACTCCCTTTCGAGATTATCAGAGATCCTATCACCAATCCCCACCGTTCGGTTAACAAGGATCCGCAATGTTGATGCTG AGAAAATCAAAACTGAACTAGCCAAAGGTGACCTCGTGGTTTGTCCAGAAGGAACAACTTGTAGAGAACCATTTCTATTGAGATTTAGTGCACTTTTCGC TGAATTAACTGACCAGATAGTGCCAGTGGCAATGAATTACAGGGTTGGTTTTTTCCATGCAACTACAGCAAGAGGATGCAAAGCTCTGGACCCTATATTC TTCTTCATGAATCCTAGACCAGTTTACGAGGTGACTTTCTTGAATCAGTTGCCAGTAGAAGCTACATGCTCATCTGGTAAAAGCCCACATGATGTTGCCA ATTATGTCCAAAGAATCTTAGCAGCTACATTAGGATTCGAATGCACAAACTTCACTAGAAAGGACAAGTACAGGGTTCTCGCTGGGAACGATGGAACAGT ATCGTACACTTCATTCGTTGATCAGATCAAGAAGGTGGTGAGCACGTTCAAGCCTTTTTTTCACTAG
AA sequence Show only first row Show all	>Potri.010G201200.1 pacid=42798409 polypeptide=Potri.010G201200.1.p locus=Potri.010G201200 ID=Potri.010G201200.1.v4.1 annot-version=v4.1 MDAVVSELEGTLLKDRDPFSYFMLVAFEASGLLRFALLLIFWPVIWLLEMLGMGEYGLKLVVFVATAGVSESEIESVARAVLPKFYMDDIDMEAWKVFSS YDKRVVVTKMPRIMVERFVKEHLRADEVIGSELVISRFGFATGFVKGNTIDSYISIRVAKLFIDEKPGLGLGTITSSFLSLCKEQIHPPFMANQNQYDHQ LVRPLPVIFHDGRLVKRPTPSTALLIILWMPLGIILATIRILVGVMLPMWAKPYLSRVLGGKVIVKGKPPPPASGGNSGVLFVCTHRTLMDPVVLSTVLR RKIPAVTYSLSRLSEILSPIPTVRLTRIRNVDAEKIKTELAKGDLVVCPEGTTCREPFLLRFSALFAELTDQIVPVAMNYRVGFFHATTARGCKALDPIF FFMNPRPVYEVTFLNQLPVEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGTVSYTSFVDQIKKVVSTFKPFFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Potri.010G201200 [exp]	0	1
					Potri.017G047100 [exp]	1.00	0.9895
AT5G07475			Cupredoxin superfamily protein...		Potri.003G150300 [exp]	3.46	0.9776
					Potri.017G047200 [exp]	3.87	0.9768
					Potri.019G082733 [exp]	5.65	0.9720
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.005G164900 [exp]	5.91	0.9683
					Potri.019G082600 [exp]	7.07	0.9714
					Potri.007G113900 [exp]	7.34	0.9702
AT3G25640			Protein of unknown function, D...		Potri.008G114500 [exp]	7.74	0.9635
AT4G35160			O-methyltransferase family pro...		Potri.011G059500 [exp]	8.36	0.9668	Pt-OOMT2.14,FOMT7
					Potri.007G114200 [exp]	9.00	0.9668

Compare expression of checked genes

Potri.010G201200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.