Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39710 585 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G02190 512 / 0 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) AT1G66180 245 / 1e-76 Eukaryotic aspartyl protease family protein (.1) AT5G37540 241 / 6e-75 Eukaryotic aspartyl protease family protein (.1) AT3G61820 140 / 2e-36 Eukaryotic aspartyl protease family protein (.1) AT2G03200 139 / 2e-36 Eukaryotic aspartyl protease family protein (.1) AT3G25700 138 / 4e-36 Eukaryotic aspartyl protease family protein (.1.2) AT1G01300 136 / 4e-35 Eukaryotic aspartyl protease family protein (.1) AT5G10770 127 / 4e-32 Eukaryotic aspartyl protease family protein (.1) AT3G54400 125 / 9e-32 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058000 [exp] 775 / 0 AT2G39710 607 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087600 [exp] 566 / 0 AT5G02190 548 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.017G131800 [exp] 253 / 2e-79 AT1G66180 570 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.004G085000 [exp] 241 / 1e-74 AT1G66180 605 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087550 [exp] 208 / 2e-65 AT5G02190 234 / 8e-76 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 156 / 1e-42 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 156 / 1e-42 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 140 / 1e-36 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 137 / 2e-35 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004713 [exp] 640 / 0 AT2G39710 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10040279 [exp] 628 / 0 AT2G39710 566 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10002707 [exp] 610 / 0 AT2G39710 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024375 [exp] 568 / 0 AT5G02190 572 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10000514 [exp] 561 / 0 AT2G39710 541 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010854 [exp] 296 / 1e-99 AT5G02190 294 / 4e-99 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10010855 [exp] 240 / 2e-72 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10003999 [exp] 153 / 2e-41 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 141 / 4e-37 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10029913 [exp] 139 / 1e-36 AT5G33340 291 / 2e-94 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.010G201400.1 pacid=42799506 polypeptide=Potri.010G201400.1.p locus=Potri.010G201400 ID=Potri.010G201400.1.v4.1 annot-version=v4.1 ATGGTTTATCTTCGGCTTCTTGTCCAGCTATTTATTTCCTTCATTTTCTTGCGATCCAAACAATGTTTCTCTTCAAATCAATCACCAATAATATTACCTC TAAGAATCCAAAACAACCATCATATCTCAACACGAAGACTCTTCTCCAATAGTTCTTCAAAAACCACGGGCAAGCTCTTATTTCATCACAATGTTACCCT CACTGCCTCTCTCACCATTGGCACGCCCCCACAAAACATTACAATGGTTCTTGACACAGGCAGTGAGCTTTCTTGGCTCCGTTGCAAAAAAGAACCGAAC TTTACATCCATTTTTAATCCTCTTGCCTCCAAAACATACACTAAAATACCTTGTTCTTCACAAACCTGCAAGACACGAACCAGTGACCTTACCCTGCCCG TTACTTGTGACCCGGCCAAGCTCTGCCACTTCATCATCTCTTACGCTGATGCCTCTTCCGTTGAAGGCCACCTCGCATTTGAAACTTTCCGGTTCGGATC GTTGACGCGGCCCGCTACTGTTTTCGGGTGCATGGACTCGGGCTCTAGCTCCAATACAGAGGAAGATGCAAAGACAACCGGGTTAATGGGCATGAACCGT GGGTCATTATCATTTGTGAACCAGATGGGATTTAGAAAATTCTCATATTGCATATCGGGTCTTGACTCGACCGGTTTTTTGCTTCTTGGGGAAGCCAGAT ACTCGTGGCTTAAACCCTTAAATTACACTCCTTTGGTTCAAATTTCGACCCCTTTACCCTATTTTGATCGGGTCGCTTACTCGGTTCAGCTTGAGGGAAT AAAGGTAAATAACAAGGTTTTGCCTTTGCCCAAATCGGTGTTTGTACCGGACCATACCGGAGCAGGGCAAACCATGGTCGACTCGGGTACCCAGTTCACG TTTTTATTGGGTCCGGTTTATAGTGCCTTGAGAAAAGAATTTCTATTACAAACTGCAGGGGTTCTAAGAGTTTTAAACGAACCTCAGTACGTGTTTCAAG GAGCAATGGATCTCTGTTATTTGATTGACTCAACTAGCTCTACCCTGCCAAATCTACCGGTTGTTAAGTTAATGTTTCGGGGAGCCGAGATGAGTGTATC GGGTCAAAGATTGTTGTATCGGGTTCCGGGTGAAGTTAGAGGGAAGGATTCAGTGTGGTGCTTTACTTTCGGAAACTCTGACGAGTTGGGAATTTCATCG TTCTTGATTGGTCACCACCAACAACAAAATGTTTGGATGGAGTATGATCTTGAAAATTCTAGGATTGGATTTGCGGAGTTAAGGTGTGATCTTGCTGGTC AACGGCTCGGCTTGGACGTCAAGAATTTAGCATGA
AA sequence Show only first row Show all	>Potri.010G201400.1 pacid=42799506 polypeptide=Potri.010G201400.1.p locus=Potri.010G201400 ID=Potri.010G201400.1.v4.1 annot-version=v4.1 MVYLRLLVQLFISFIFLRSKQCFSSNQSPIILPLRIQNNHHISTRRLFSNSSSKTTGKLLFHHNVTLTASLTIGTPPQNITMVLDTGSELSWLRCKKEPN FTSIFNPLASKTYTKIPCSSQTCKTRTSDLTLPVTCDPAKLCHFIISYADASSVEGHLAFETFRFGSLTRPATVFGCMDSGSSSNTEEDAKTTGLMGMNR GSLSFVNQMGFRKFSYCISGLDSTGFLLLGEARYSWLKPLNYTPLVQISTPLPYFDRVAYSVQLEGIKVNNKVLPLPKSVFVPDHTGAGQTMVDSGTQFT FLLGPVYSALRKEFLLQTAGVLRVLNEPQYVFQGAMDLCYLIDSTSSTLPNLPVVKLMFRGAEMSVSGQRLLYRVPGEVRGKDSVWCFTFGNSDELGISS FLIGHHQQQNVWMEYDLENSRIGFAELRCDLAGQRLGLDVKNLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39710			Eukaryotic aspartyl protease f...		Potri.010G201400 [exp]	0	1
AT3G49950	GRAS		GRAS family transcription fact...		Potri.005G145600 [exp]	5.00	0.8084
AT3G61172		LCR8	low-molecular-weight cysteine-...		Potri.016G061600 [exp]	14.45	0.8253
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.001G083900 [exp]	21.07	0.8186
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Potri.001G380100 [exp]	27.16	0.8037
					Potri.014G093600 [exp]	28.77	0.8105
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Potri.017G078300 [exp]	30.75	0.8027	PIN14
AT3G21670			Major facilitator superfamily ...		Potri.002G225500 [exp]	31.24	0.8037
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Potri.002G122900 [exp]	36.33	0.8084
					Potri.008G132650 [exp]	38.07	0.7711
					Potri.007G038000 [exp]	40.21	0.8046

Compare expression of checked genes

Potri.010G201400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.