Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55530 310 / 2e-106 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT1G04790 76 / 2e-15 RING/U-box superfamily protein (.1) AT4G32600 72 / 5e-14 RING/U-box superfamily protein (.1) AT5G60820 66 / 4e-12 RING/U-box superfamily protein (.1) AT3G58720 64 / 7e-12 RING/U-box superfamily protein (.1.2) AT5G66160 64 / 9e-12 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) AT5G66070 63 / 1e-11 RING/U-box superfamily protein (.1.2) AT1G35625 63 / 1e-11 RING/U-box superfamily protein (.1) AT5G56340 64 / 2e-11 ATCRT1 RING/U-box superfamily protein (.1) AT3G13430 64 / 2e-11 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G034700 [exp] 308 / 6e-106 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.003G176500 [exp] 81 / 7e-17 AT1G04790 264 / 2e-78 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 66 / 3e-12 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 65 / 3e-12 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 63 / 3e-12 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 66 / 4e-12 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.002G153400 [exp] 64 / 4e-12 AT2G20030 83 / 8e-19 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 64 / 7e-12 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 65 / 1e-11 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000513 [exp] 315 / 1e-108 AT3G55530 389 / 7e-138 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10002706 [exp] 312 / 3e-107 AT3G55530 382 / 5e-135 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10004977 [exp] 297 / 2e-101 AT3G55530 371 / 1e-130 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10001568 [exp] 287 / 3e-97 AT3G55530 361 / 9e-127 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10023671 [exp] 75 / 5e-15 AT1G04790 232 / 7e-67 RING/U-box superfamily protein (.1) Lus10003400 [exp] 64 / 3e-12 AT5G53110 152 / 3e-45 RING/U-box superfamily protein (.1) Lus10020258 [exp] 67 / 4e-12 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10002637 [exp] 66 / 4e-12 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10006074 [exp] 65 / 9e-12 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10028406 [exp] 64 / 1e-11 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G201500.3 pacid=42797385 polypeptide=Potri.010G201500.3.p locus=Potri.010G201500 ID=Potri.010G201500.3.v4.1 annot-version=v4.1 ATGAGTTTTGTTTTCCGGGGAGCTCGATCTGATATCGAAAATGGCTTCCCTAGTTTTGTACCTGAACGACGTACACTGCGTGTTCACGCAACTCGGCCTG TCAATTCCAATTCACTTGTTTTTCTTGTCACAGTTCTCTTGCTATTCATGATTTTGAACTCGCACCAAATGTCACCTAATTTCCTGCTTTGGCTAGTGCT TGGTGTGTTTTTTATGGCGACGACTTTGAGGATGTATGCAACCTGTCAACAACTCCAAGCTCAGGCGCAAGCCCATGCTGTGATGGCAAGTGGTCTTCTT GGTCATACTGAGTTGCGGTTGCATATGCCGCCATCCATAGCCCTTGCTACCAGAGGGCGTTTGCAAGGACTCAGGCTTCAGCTTGCACTTCTTGATCGAG AGTTTGATGACCTAGATTATGAAACTTTGAGAGCACTGGATGGTGATAACGTTCCCAATGGCACTTCAATGAGCGAGGAAGAGATAAATGCCCTTCCAGT TCACAAATACAAGGTCACTGGTCCTCAAAATGGTGGCTCCTCAATGCAACAAGCCTCTTCTTCTGTCTCGGCTGAGCAAAAGAAGCAAGATACAGGTAAT GCTATTGGGAGCATGAAGTCTTCAGATGATGAGCTGACTTGCAGTGTGTGCTTGGAGCAAGTTAGCATGGGGGAAGTGATCCGCACCTTGCCATGTTTAC ATCAGTTCCATGCGAATTGCATTGATCCATGGCTACGGCAACAGGGAACATGCCCAGTCTGTAAATTTAGGGCAGGATCTGGGTGGAATGAAAATGGACA AGGTGGATTGGATGCTTCATACATGGTTTAG
AA sequence Show only first row Show all	>Potri.010G201500.3 pacid=42797385 polypeptide=Potri.010G201500.3.p locus=Potri.010G201500 ID=Potri.010G201500.3.v4.1 annot-version=v4.1 MSFVFRGARSDIENGFPSFVPERRTLRVHATRPVNSNSLVFLVTVLLLFMILNSHQMSPNFLLWLVLGVFFMATTLRMYATCQQLQAQAQAHAVMASGLL GHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDGDNVPNGTSMSEEEINALPVHKYKVTGPQNGGSSMQQASSSVSAEQKKQDTGN AIGSMKSSDDELTCSVCLEQVSMGEVIRTLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNENGQGGLDASYMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Potri.010G201500 [exp]	0	1
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Potri.001G200100 [exp]	5.29	0.8509	CYP90.1
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Potri.012G023900 [exp]	5.74	0.8756
AT1G04590		EMB2748	unknown protein		Potri.016G102800 [exp]	6.24	0.8232
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Potri.004G163200 [exp]	8.48	0.8439
AT1G07350		SR45a	serine/arginine rich-like prot...		Potri.001G248100 [exp]	8.48	0.8461
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.017G056201 [exp]	9.16	0.8568
					Potri.001G131500 [exp]	10.09	0.8164
AT5G08391			Protein of unknown function (D...		Potri.017G064301 [exp]	15.03	0.8766
AT5G59100			Subtilisin-like serine endopep...		Potri.009G037900 [exp]	15.90	0.8287
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Potri.004G157600 [exp]	17.02	0.8353	Pt-SEC14.2

Compare expression of checked genes

Potri.010G201500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.