Plant FIBer expression Database

Potri.010G201900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02220 60 / 8e-14 unknown protein
AT1G07500 35 / 0.0007 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G057600
[exp]
92 / 1e-26 AT5G02220 56 / 2e-12 unknown protein
Potri.016G100000
[exp]
52 / 4e-11 AT5G02220 39 / 1e-05 unknown protein
Potri.009G034001
[exp]
42 / 4e-07 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001570
[exp]
44 / 2e-07 AT5G02220 57 / 2e-12 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G201900.1 pacid=42796801 polypeptide=Potri.010G201900.1.p locus=Potri.010G201900 ID=Potri.010G201900.1.v4.1 annot-version=v4.1
ATGGAAGTTGATGAAGGATGCAGGACACCAAGACGCAGCGAATATCAGATACCAGCGGCTCTGGTGTGCCCGCCACCACCCAAGAAGAAACCCTGTTATG
CGAAGCAAAGAAGGAACCCTCCAAAGGAAGGATATTTTCAGCCTCCTGATCTTGAAGCAATCTTGCTGAATATTGCACCAAGAAGGGAAGCTTGTGCTTG
A
AA sequence
>Potri.010G201900.1 pacid=42796801 polypeptide=Potri.010G201900.1.p locus=Potri.010G201900 ID=Potri.010G201900.1.v4.1 annot-version=v4.1
MEVDEGCRTPRRSEYQIPAALVCPPPPKKKPCYAKQRRNPPKEGYFQPPDLEAILLNIAPRREACA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G02220 unknown protein Potri.010G201900
[exp]
0 1
AT1G27170 transmembrane receptors;ATP bi... Potri.005G004100
[exp]
3.00 0.8916
AT3G01320 SNL1 SIN3-like 1 (.1.2) Potri.001G316300
[exp]
7.74 0.8734
Potri.002G003050
[exp]
8.77 0.8548
AT1G27730 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1... Potri.001G295500
[exp]
11.40 0.8758
AT3G12630 SAP5 stress associated protein 5, A... Potri.001G269400
[exp]
12.24 0.8526
AT1G50460 ATHKL1, HKL1 hexokinase-like 1 (.1) Potri.001G254800
[exp]
12.72 0.8677
AT2G38450 unknown protein Potri.016G128700
[exp]
12.72 0.8506
Potri.018G074050
[exp]
13.26 0.7664
AT5G51780 bHLH bHLH036 basic helix-loop-helix (bHLH) ... Potri.015G134300
[exp]
15.23 0.8763
AT4G17980 NAC ANAC071 NAC domain containing protein ... Potri.019G099900
[exp]
16.61 0.7985

Potri.010G201900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.