Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ARP909
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12380 998 / 0 ATARP5 actin-related protein 5 (.1.2) AT2G42100 104 / 7e-24 Actin-like ATPase superfamily protein (.1) AT3G12110 102 / 5e-23 ACT11 actin-11 (.1) AT3G53750 101 / 8e-23 ACT3 actin 3 (.1) AT2G37620 101 / 8e-23 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT3G46520 100 / 3e-22 ACT12 actin-12 (.1) AT5G09810 99 / 3e-22 ACT2/7, ACT7 actin 7 (.1) AT5G59370 98 / 8e-22 ACT4 actin 4 (.1.2) AT3G27000 98 / 1e-21 ATARP2, WRM, ARP2 WURM, actin related protein 2 (.1) AT1G49240 97 / 2e-21 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055500 [exp] 100 / 1e-22 AT3G12110 765 / 0.0 actin-11 (.1) Potri.019G010400 [exp] 100 / 3e-22 AT5G09810 774 / 0.0 actin 7 (.1) Potri.016G045500 [exp] 100 / 3e-22 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 100 / 3e-22 AT3G12110 767 / 0.0 actin-11 (.1) Potri.001G309500 [exp] 100 / 3e-22 AT5G09810 775 / 0.0 actin 7 (.1) Potri.010G204300 [exp] 99 / 3e-22 AT3G12110 733 / 0.0 actin-11 (.1) Potri.001G453600 [exp] 99 / 3e-22 AT5G09810 769 / 0.0 actin 7 (.1) Potri.006G139900 [exp] 99 / 1e-21 AT5G09810 554 / 0.0 actin 7 (.1) Potri.001G326600 [exp] 94 / 3e-20 AT3G27000 758 / 0.0 WURM, actin related protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023400 [exp] 476 / 7e-163 AT3G12380 456 / 2e-155 actin-related protein 5 (.1.2) Lus10040281 [exp] 464 / 4e-158 AT3G12380 446 / 3e-151 actin-related protein 5 (.1.2) Lus10006783 [exp] 100 / 3e-22 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 100 / 3e-22 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005819 [exp] 100 / 3e-22 AT5G09810 778 / 0.0 actin 7 (.1) Lus10016259 [exp] 100 / 3e-22 AT3G46520 767 / 0.0 actin-12 (.1) Lus10016558 [exp] 100 / 3e-22 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 100 / 3e-22 AT3G12110 768 / 0.0 actin-11 (.1) Lus10005457 [exp] 100 / 3e-22 AT3G12110 768 / 0.0 actin-11 (.1) Lus10004169 [exp] 100 / 3e-22 AT3G12110 723 / 0.0 actin-11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00022 [poplar] [flax] Actin Actin
Representative CDS sequence Show only first row Show all	>Potri.010G202000.1 pacid=42796993 polypeptide=Potri.010G202000.1.p locus=Potri.010G202000 ID=Potri.010G202000.1.v4.1 annot-version=v4.1 ATGCCTTTTGTTTCCCAGATAAAAAGACAAACAGATTACAATCTCTACTCTTCAACTACTCCTATAGTAATCGACAATGGTGCCTCCAATTTTCGTATTG GATGGGCGGGGGAGAACGATCCTCGAGTTATTTTCCGTAACATTGTTCAAAGACCACGCCACAAAACCACTGGTGAAACGGTTAGTATTGTTGGGGATCA TGATACTACATTGTTGAAGTACTTCGATTGTAGTCGGTCGGGGCCTCGCTCCGCTTTCGATAGCAATGTTGTTTATCAGTTCGAGATTATGGAATATATT CTCGACTTTGGTTTCGATCGGCTGGGAGCAAATGGATCAGAGATTGATCATCCTGTCCTGATCACAGAATGCATACTCAACCCTGTTCAATCTCGCAGTA AAATGGCGGAGCTGCTTTTTGAAACTTACGGAGTTCCATCTGTAGCGTTCGGTGTTGATGCTGCATTCAGCTATAAGTATAATCAACAGCATGGGATTTG TGATAAAGATGGGCTTGCTATTTGTCCAGGATTTACAACAACTCATGTTATTCCGTTTATTGATGGAGAGCCTGTTTATAAAGGGTGCTCCCGAACTAAT ATTGGTGGATACCATGTCACTGATTACTTGAAGCAGCTCCTTTCACTTAAATACCCTCATCACATGGCTCGGTTAACATGGGAGAAGGTTGAAGACCTGA AGATGGAGCATTGTTATATTGCAACAGACTATGCTTCAGAAGCTCGATTATTTCAGAAAGGGACCAAGGAAGCTGAAGAAAAAACGAGGTGTTGGCAGCT CCCTTGGGTTCCACCACCAGTTGAGGAGCCTCCATCAGAAGAAGAGATTGCCAGAAAGGCAGCTATAAAGGAAAGACAAGGTCAACGGTTGCGAGAAATG GCTGAGGCAAAAAGGTCAACGAGGATAAATGAGCTAGAGAACCAGTTGCGTGGCTTGGAATTCCTTTTGCAGCAGCTGGAACAAGTGGAAGAGAGTGAAA TTCCATTTTTCCTGAAAGATACTGGCTATGTTTCCAGGCAAGAAATAGAAACTGCTCTTGCCAAAGCAACGCAGTCATTACGAAAAGTAAAGGGTGAGCC AAAGGGTGAACAGGCTGAAGTTGAAGAAAAGACTGATGAAAAGTATCCTCTTGTCAATATTCCTGATAACATGCTGACCCAAGATCAGCTAAGAGAAAAG AGAAGACAGATGTTCCTTAAAACCACATCTGATGGCCGCCAACGAGCTAAACAGAAACGTGTTGAAGAGGACCTGGAACGAGAAAGGAAAAATCAGCTAG ATGAACAAAAACGCTTAGAGAACCCAGAGCTTTATCTAGGAGAAATGCGTACTAAATACAAAGAACTCTGTGAGAAAGTTGAGCAGCGAAAACGACTCAA GACAAATGGGAACCACTCAAATGGAAATGGTATGTCTGGTGGTGTTGGTCGCGGTGAGAGATTGAATGCTGCCCAAAGAGAAAGGATGCGCCTCTTAACA ACAGCAGCTTTTGACCGAGGGAAGGGTGAGGATAATTTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAACTGATGAGCAAAGATAACGATGATGATG ATGAGGGGCCAGATGAGGATGAGACAGAGCTTGCCCGTGTATCTTCCAGGCTTCAGGAGATAGACGCAACATTTGTTCCCAAGCCAGAACCAGGGCCCTC ACAATCAGCTGCTGACATGCCACGGTCTCGTCCTCTTACCAAGGAAGATTTCCAAATTCTGCTCGGGGTTGAAAGGTTCCGATGCCCTGAAATTCTGTTT CATCCCAACTTAGTTGGAATCGACCAGGCAGGCCTAGATGAGACGGCTGGGGTCTCAATGAGGAGGCTATCATCCAAGGACCAAGTCTTGGAGGAAAGAC TGACCAATTCAATTCTGATGACTGGTGGAAGCTGCCTTTACCCTGGTCTGAGTGAGCGCTTAGAAGCTGGAATCCGAATGATTAGGCCATGTGGGTCACC TATAAAGGTGGTCAGAGCACTTGATCCTGTTCTTGACGCTTGGCGCGGGGCTTCTCTTTATGCTGCTGCAGTTCAATTCCCACAACAGACATTTAGTAGA ATGGATTACTTTGAGAAGGGTGAAGATTGGCTTCGCGGATACCAATTTCAATACACTTTATAA
AA sequence Show only first row Show all	>Potri.010G202000.1 pacid=42796993 polypeptide=Potri.010G202000.1.p locus=Potri.010G202000 ID=Potri.010G202000.1.v4.1 annot-version=v4.1 MPFVSQIKRQTDYNLYSSTTPIVIDNGASNFRIGWAGENDPRVIFRNIVQRPRHKTTGETVSIVGDHDTTLLKYFDCSRSGPRSAFDSNVVYQFEIMEYI LDFGFDRLGANGSEIDHPVLITECILNPVQSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQHGICDKDGLAICPGFTTTHVIPFIDGEPVYKGCSRTN IGGYHVTDYLKQLLSLKYPHHMARLTWEKVEDLKMEHCYIATDYASEARLFQKGTKEAEEKTRCWQLPWVPPPVEEPPSEEEIARKAAIKERQGQRLREM AEAKRSTRINELENQLRGLEFLLQQLEQVEESEIPFFLKDTGYVSRQEIETALAKATQSLRKVKGEPKGEQAEVEEKTDEKYPLVNIPDNMLTQDQLREK RRQMFLKTTSDGRQRAKQKRVEEDLERERKNQLDEQKRLENPELYLGEMRTKYKELCEKVEQRKRLKTNGNHSNGNGMSGGVGRGERLNAAQRERMRLLT TAAFDRGKGEDNFGAKDEDWQLYKLMSKDNDDDDEGPDEDETELARVSSRLQEIDATFVPKPEPGPSQSAADMPRSRPLTKEDFQILLGVERFRCPEILF HPNLVGIDQAGLDETAGVSMRRLSSKDQVLEERLTNSILMTGGSCLYPGLSERLEAGIRMIRPCGSPIKVVRALDPVLDAWRGASLYAAAVQFPQQTFSR MDYFEKGEDWLRGYQFQYTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Potri.010G202000 [exp]	0	1	ARP909
AT3G26750			unknown protein		Potri.007G019733 [exp]	6.78	0.7251
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.004G035300 [exp]	7.81	0.7312
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Potri.008G188150 [exp]	12.00	0.7129
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Potri.008G046600 [exp]	14.96	0.6976
AT3G42170			BED zinc finger ;hAT family di...		Potri.016G026066 [exp]	30.52	0.7049
AT4G28990			RNA-binding protein-related (....		Potri.006G160500 [exp]	31.98	0.6176
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015600 [exp]	35.72	0.6695
AT5G18610			Protein kinase superfamily pro...		Potri.008G046500 [exp]	37.13	0.6995	Pt-PNPK2.2
AT1G05270			TraB family protein (.1)		Potri.017G038500 [exp]	40.62	0.6263
AT3G63380			ATPase E1-E2 type family prote...		Potri.016G009500 [exp]	42.77	0.6926

Compare expression of checked genes

Potri.010G202000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.