Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12560 462 / 1e-154 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT5G13820 447 / 7e-149 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT1G07540 318 / 3e-99 MYB TRFL2 TRF-like 2 (.1) AT3G46590 286 / 6e-88 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT5G59430 256 / 1e-76 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G53790 132 / 1e-33 MYB TRFL4 TRF-like 4 (.1) AT1G17460 44 / 0.0003 MYB TRFL3 TRF-like 3 (.1.2) AT2G37025 44 / 0.0004 TRFL8 TRF-like 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G057300 [exp] 1044 / 0 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.009G032000 [exp] 517 / 3e-175 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.001G241600 [exp] 503 / 2e-169 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.006G086500 [exp] 376 / 8e-121 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.003G063700 [exp] 48 / 2e-05 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.001G170200 [exp] 45 / 0.0001 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.006G126300 [exp] 45 / 0.0002 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002704 [exp] 688 / 0 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10000947 [exp] 679 / 0 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10040285 [exp] 653 / 0 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10023406 [exp] 585 / 0 AT5G13820 392 / 5e-128 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10016527 [exp] 340 / 2e-107 AT3G46590 388 / 1e-127 TRF-like 1 (.1.2.3) Lus10040795 [exp] 338 / 1e-106 AT1G07540 400 / 1e-132 TRF-like 2 (.1) Lus10024385 [exp] 296 / 2e-90 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10010844 [exp] 278 / 2e-83 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10013809 [exp] 46 / 1e-05 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10015664 [exp] 47 / 5e-05 AT1G72650 335 / 9e-107 TRF-like 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G202400.1 pacid=42799100 polypeptide=Potri.010G202400.1.p locus=Potri.010G202400 ID=Potri.010G202400.1.v4.1 annot-version=v4.1 ATGGTGGTGAAGAAGAGACAATATTATGGTTTCAATGGCTTTCATATGCCCCCAGTTCCCAGGGCTCCGAGATCAGCTAGAGGGAGGGGGTTGAATAAGA TGAAAGTTGAGGATAGTCAAATATGTGCATTTGAATTGCTTGCTTCCCTAGCAGGCAAGCTATTGCAGGAGAGTGAAAGTTCAGCTTCCAGTAATGCATC TGAAGCAAATGATCAACCTATAATTGGTGGTGGTGTGAAATTTGAGCAAGATGATGATAGACCATTGAAAGCAGAATGCCTTGATCATGGAAGTTGTGGA GAAAGTGCTCTTTTTACTCGGTTTTCCTCGCCAAACAGTGATCAAAAGTGCCTTCTAAATGAATTTCCACATGCTGAGAGCAATTTATTTCTGGAGCGCT CTTCAATGATCACAAATTCCAATTCCTCAAAGAATGGCGGTGCTGATTTGAAGTCTGTGATTTGCAAAAGTAAGAGTGCATGTGAAAATATCCCTGGTAA AGTCGAGGGCTCTTCTGATTCTAGGGTGTCTTGTGATGGTTATGTGGACAATGGATTAAGTAGACAGAAAAGGTGTGACGGGCTAGATACTAGAGGTTTG ATTGTTGATCCCTGCAGTTCAAATGATCCCATGGAAATGTGCATGAAATTTCCGGCATTGATCAATTCAGTCAACAATGTTGAATTGCCATCATGCAGGG ACCCTGTTCCTAGTGCTTCTATTCCAAGGCACAGGAATGGTACTAAATTAGGTATTAGAGATGATGATGAAAACTTTACTAGGTGTAATAAACCTTTAAC AAAGTCAAAGGCTTTTAGGCCTCCACAACGAATTGGAGACCGAAGAATAAGGAAATTGCTGACTTCCAAATACTGGAAAGTAGCTCCAAAATTGAAGGAT TGTGAATTTTCCAAACCTGCATTTTTAGAAGGGGGGGCGAAGTCTCACTATCTCAAGAGGAAATTATGTTACAGTCGTGAAAGGTATCAACTTAACACCT TTTATAAGAGGAGGAAGTTTACTGATCATAGTGTAGTTGTGACTTCTGATGGAGGGTTCAGCAGTGAAAGTGTTTGCAATTCACCTGATAAGAATATGAC TGGAGACAAGAATGGTGCTTCCATAATGTTTCACGATGCAGCTAATGGGGTATCATCTTCTGTTATAGGTCATCAAGCATCCTTCCACTCCAAGGATTCT CAAGTGAAGTTCAGTATTAAGTCCTTTAGAGTTCCAGAGCTTTTAATTGAGGTACCAGAAACTGCAACTGTTGGTTCACTGAAGCGGACTGTAGTGGAGG CTGTAAGTGCTATACTTGGAGGTGGTTTACGAGTTGGGGTGCTTCTTCATGGAAAGAAGGTTAGGGATGACAATAGAACCCTATTGCAGACTGGCATCAC TTCTAATGAGAATCTTGATACTCTGGGTTTCTCATTGGAGCCTACTCCTGTGCAAGTTTCCCCACCCTTGTGCACTGAAGATCCTGCAGCACTATTACCA TGCGACACATCTCAACTTATATTGAGGTCGCCAACCACTCCTATTGTAGATTCAGGAGTTTCTGACGCCTTACCTGATCCTCCCCCACTGACTAATTTGG ACACCAATATTGAAAGTAATCGTGAATCAGTTTCCTCCCATGCTGACATAGTAACTGACAATACACTGCCGGATTCCAGAGCTCTGGTTGCAGTTCCACC AGTGAATGCTGAGGAACTTGCTATGGTTCCTTTAAACCAGAAATCTAAGCGATCTGAACTTGTACAGCGTCGAACCAGGAGACCATTCTCTGTGTCAGAA GTAGAAGCACTAGTGCATGCAGTTGAGGAACTAGGAACTGGAAGGTGGCGTGATGTTAAATTGTGTTCTTTTGAAGATGCAGACCATCGGACTTATGTGG ATTTGAAGGATAAATGGAAGACATTGGTTCACACGGCGCAGATTGCCCCTCAGCAAAGAAGGGGCGAGCCTGTGCCCCAGGAGCTCTTGGACAGGGTGTT GGCTGCACATGCTTACTGGTCCCAACATCAAGCTAAGCAACATAGTAAGAATCAGACTGCTATACTGAAGATTACTGACGCTCACGCTGTTAGAAATGGA GTTCAAGATATCCAGTCAATATGA
AA sequence Show only first row Show all	>Potri.010G202400.1 pacid=42799100 polypeptide=Potri.010G202400.1.p locus=Potri.010G202400 ID=Potri.010G202400.1.v4.1 annot-version=v4.1 MVVKKRQYYGFNGFHMPPVPRAPRSARGRGLNKMKVEDSQICAFELLASLAGKLLQESESSASSNASEANDQPIIGGGVKFEQDDDRPLKAECLDHGSCG ESALFTRFSSPNSDQKCLLNEFPHAESNLFLERSSMITNSNSSKNGGADLKSVICKSKSACENIPGKVEGSSDSRVSCDGYVDNGLSRQKRCDGLDTRGL IVDPCSSNDPMEMCMKFPALINSVNNVELPSCRDPVPSASIPRHRNGTKLGIRDDDENFTRCNKPLTKSKAFRPPQRIGDRRIRKLLTSKYWKVAPKLKD CEFSKPAFLEGGAKSHYLKRKLCYSRERYQLNTFYKRRKFTDHSVVVTSDGGFSSESVCNSPDKNMTGDKNGASIMFHDAANGVSSSVIGHQASFHSKDS QVKFSIKSFRVPELLIEVPETATVGSLKRTVVEAVSAILGGGLRVGVLLHGKKVRDDNRTLLQTGITSNENLDTLGFSLEPTPVQVSPPLCTEDPAALLP CDTSQLILRSPTTPIVDSGVSDALPDPPPLTNLDTNIESNRESVSSHADIVTDNTLPDSRALVAVPPVNAEELAMVPLNQKSKRSELVQRRTRRPFSVSE VEALVHAVEELGTGRWRDVKLCSFEDADHRTYVDLKDKWKTLVHTAQIAPQQRRGEPVPQELLDRVLAAHAYWSQHQAKQHSKNQTAILKITDAHAVRNG VQDIQSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12560		ATTBP2, TRFL9	TELOMERIC DNA-BINDING PROTEIN ...		Potri.010G202400 [exp]	0	1
AT4G39140			RING/U-box superfamily protein...		Potri.004G158400 [exp]	7.74	0.6127
AT3G54850		ATPUB14	plant U-box 14 (.1)		Potri.010G226500 [exp]	8.12	0.6084
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.003G081800 [exp]	9.00	0.6225	RAB1.6
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.007G002500 [exp]	9.16	0.5960
AT5G16880			Target of Myb protein 1 (.1.2....		Potri.019G050000 [exp]	10.72	0.6020
AT2G30350			Excinuclease ABC, C subunit, N...		Potri.019G127600 [exp]	13.49	0.5250
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Potri.010G093200 [exp]	15.29	0.5464	CUL3.2
AT1G08800			Protein of unknown function, D...		Potri.019G012200 [exp]	16.79	0.6003
AT3G02740			Eukaryotic aspartyl protease f...		Potri.019G054900 [exp]	28.35	0.6025
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Potri.005G033800 [exp]	30.03	0.5038

Compare expression of checked genes

Potri.010G202400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.