Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EXPA4.2,+E2EXPA15
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39700 473 / 2e-171 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT3G55500 442 / 4e-159 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G28950 429 / 4e-154 ATHEXPALPHA1.8, ATEXP6, ATEXPA6 ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1) AT2G37640 427 / 3e-153 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G02260 412 / 3e-147 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT1G69530 353 / 2e-124 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT5G56320 349 / 2e-122 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G03090 348 / 2e-122 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G05290 345 / 4e-121 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G40610 344 / 1e-120 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G057100 [exp] 482 / 4e-175 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.009G031800 [exp] 466 / 2e-168 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.001G240900 [exp] 464 / 5e-168 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.006G086100 [exp] 434 / 5e-156 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.016G135200 [exp] 377 / 1e-133 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 375 / 1e-132 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.019G057500 [exp] 368 / 4e-130 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.001G001100 [exp] 357 / 7e-126 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.008G088300 [exp] 357 / 1e-125 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040801 [exp] 459 / 1e-165 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10040286 [exp] 458 / 2e-165 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10016533 [exp] 457 / 3e-165 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10023407 [exp] 457 / 5e-165 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10024388 [exp] 431 / 9e-155 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10010841 [exp] 374 / 8e-128 AT2G37640 373 / 6e-127 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10008603 [exp] 359 / 2e-126 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10036763 [exp] 357 / 2e-125 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10034227 [exp] 356 / 3e-125 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10042214 [exp] 356 / 4e-125 AT2G40610 393 / 7e-140 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.010G202500.1 pacid=42797930 polypeptide=Potri.010G202500.1.p locus=Potri.010G202500 ID=Potri.010G202500.1.v4.1 annot-version=v4.1 ATGGCTATTAGGTCTACCATTTGTGTTGCGTCTTTGGTGCTGTTTTTGACTCTTGTCGAGGCAAGAATTCCTGGTGTTTACACTGGAGGAGCCTGGCAGA GCGCCCATGCTACCTTTTACGGTGGCAGTGACGCCTCTGGGACTATGGGCGGTGCTTGTGGGTACGGCAACTTGTACAGCCAAGGCTATGGCGTGAATAC CGCAGCACTAAGCACAGCCCTGTTCAACAATGGCCTTAGTTGTGGTGCTTGCTTTGAAATAAAGTGCGGTAATGACCCACAATGGTGCCACTCTGGTAGC CCGTCAATTTTAATCACAGCAACAAACTTTTGCCCTCCTAATTATGCATTGCCCAGTGACAATGGTGGCTGGTGCAATCCTCCTCGTCCTCACTTCGATC TTGCTATGCCTGTGTTCCTCAAGATCGCTGAGTACCGTGCTGGCATCGTCCCTGTCTCTTACCGCCGGGTGCCGTGTAGAAAACCAGGGGGGATCAGGTT CCAAATCAACGGTCACCGTTACTTCAACTTGGTTTTGATCACCAACGTTGCAGGTGCAGGAGATATTGTGAAAGTGAGCGTGAAGGGATCAAAGACTGGA TGGATGAGCATGAGTCGTAACTGGGGTCAAAACTGGCAGTCAAACTCAGTTTTGGTTGGCCAGTCATTATCTTTCAGGGTCACCGGCAGTGATAGACGCA CCTCTACTTCATGGAACGTTGTTCCTTCAAACTGGCAATTTAGTCAAACTTTCGTTGGAAAGAATTTTAGGGTTTAA
AA sequence Show only first row Show all	>Potri.010G202500.1 pacid=42797930 polypeptide=Potri.010G202500.1.p locus=Potri.010G202500 ID=Potri.010G202500.1.v4.1 annot-version=v4.1 MAIRSTICVASLVLFLTLVEARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCGNDPQWCHSGS PSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPVFLKIAEYRAGIVPVSYRRVPCRKPGGIRFQINGHRYFNLVLITNVAGAGDIVKVSVKGSKTG WMSMSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNVVPSNWQFSQTFVGKNFRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.010G202500 [exp]	0	1	Pt-EXPA4.2,+E2EXPA15
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.014G027100 [exp]	7.93	0.7782	Pt-HSFB4.2
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.011G053600 [exp]	8.12	0.7738
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.015G061400 [exp]	9.48	0.7600
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162400 [exp]	15.23	0.7555
AT1G64460			Protein kinase superfamily pro...		Potri.002G171400 [exp]	21.21	0.6742
AT3G19540			Protein of unknown function (D...		Potri.014G019900 [exp]	27.92	0.6631
AT4G00752			UBX domain-containing protein ...		Potri.014G075600 [exp]	27.92	0.7453
AT5G28150			Plant protein of unknown funct...		Potri.005G050900 [exp]	33.00	0.7241
					Potri.016G013000 [exp]	33.40	0.7111
AT1G11580		ATPMEPCRA	methylesterase PCR A (.1)		Potri.011G135000 [exp]	34.24	0.6997

Compare expression of checked genes

Potri.010G202500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.