Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48670 716 / 0 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT3G12550 613 / 0 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT1G15910 462 / 6e-154 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT4G00380 451 / 9e-150 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G80790 427 / 1e-140 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT1G13790 430 / 2e-140 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT5G59390 383 / 3e-124 XH/XS domain-containing protein (.1) AT4G01780 379 / 4e-124 XH/XS domain-containing protein (.1) AT4G01180 358 / 5e-115 XH/XS domain-containing protein (.1) AT3G29375 153 / 8e-41 XH domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G184800 [exp] 577 / 0 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.003G181000 [exp] 488 / 3e-164 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Potri.001G240666 [exp] 268 / 5e-82 AT1G13790 228 / 3e-67 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.010G087400 [exp] 54 / 3e-07 AT3G22430 418 / 3e-142 unknown protein Potri.008G152900 [exp] 51 / 2e-06 AT3G22430 409 / 2e-138 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002702 [exp] 839 / 0 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 831 / 0 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002703 [exp] 688 / 0 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10037986 [exp] 534 / 0 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10009217 [exp] 516 / 4e-175 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10000949 [exp] 458 / 9e-153 AT3G48670 319 / 2e-100 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10026076 [exp] 447 / 6e-148 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10032933 [exp] 307 / 8e-97 AT1G13790 261 / 9e-80 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Lus10000948 [exp] 240 / 8e-75 AT3G12550 193 / 2e-58 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) Lus10000950 [exp] 190 / 2e-52 AT3G12550 159 / 3e-42 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF03468 [poplar] [flax] XS XS domain CL0221 [poplar] [flax] PF03469 [poplar] [flax] XH XH domain CL0221 [poplar] [flax] PF03470 [poplar] [flax] zf-XS XS zinc finger domain
Representative CDS sequence Show only first row Show all	>Potri.010G202700.2 pacid=42797742 polypeptide=Potri.010G202700.2.p locus=Potri.010G202700 ID=Potri.010G202700.2.v4.1 annot-version=v4.1 ATGGATCACAGTTCAGACGAGGAGATTGACGCAAGCGGATCTGATTCTGAAATGGATGAGTATGAAAATGAAGCATATGAAGAACTGAAGGACGGGAAGC TCCGAGTGAAAATTTCTGATGAGACTTTTGCTTGCCCCTTCTGCCCCCAGAAGAAAAGGCAAGCTTACCTTTACAAGGACCTCTTGCAGCATGCTTCGGG GGTAGGCAAGAGTAGGTCACAGAAAAGAAGTACCAAAGAGAAGGCTAATCACCTGGCACTGGTGAAGTATTTGGAAAAGGATTTAACAGCTGCAGGCAGA ACATCAAAACCTGTGGGTGAGACTGATCCTCATAGTGATTGTAGCCATGTGGAGAAAATGGATGTAAGCCAATCTGAAATGGATAACTGTGAAGATAAAT CTTATGAAGAACTGAAGAATGGAAATCATCAAGTGAAAATTTCAGATGAGACTTTTACTTGTCCGTACTGCCCCACCAAGAAGAGAAAGCGTGATTACGC ATACCAGGACCTCCTCCAGCATGCTACTGGGGTGGGAAAGAGTTTGTCAGAGAAAAGGACTGCCAAGGAGAAGGCTGATCACCTCGCATTAGTTAAGTAC TTGGAAAAGGATCTAGCAGCTGCAGGCAGTTCATCAAAACCAGCAGGCAAGACTGAAAATCTTAGTAGTTGCAGTCAGAACGACAAGTTTGTGTGGCCCT GGACAGGTATTGCGGTTAACCTACCTACTAGGAGGGCTGAGGATGGGCGATTTGTTGGAGAAAGTGGGTCTAAATTCAGGGATGAGTTGAAAAGTAGAGG GTTTAACCCGACAAGAGTTCATCCTCTGTGGAATTTTCGTGGTCATTCAGGAACTGCCGTTGTGGAATTCAACAAAGACTGGCCTGGTTTGCACAATGCC ATTTCATTTGAAAAGGCTTATGAGGCAGATCAACAAGGGAAAAAGGAATGGTTTGCTAGTAGTGGGGAAAAATCTGGTATCTATTGTTGGGTTGCACGTG CTGATGATTATAATTCGAACAATATTATTGGAGAACACCTAAGAAAAATTGGTGACGTTAGAACAATTTCTGATCTCATAGAGGAAGAAGCCCGAAAACA GGACAAGCTTGTATTCAATCTCACCAATGTTATTGAGACCAAGAATAGGTACTTGAAAGAGATGGAGTTGAGATGTTCAGAGACTTCAGCCTCCCTCAAC AAGTTGGTTCAAGAAAAAGAGAAGCTTCTTCATGCTTATAATGAAGAGATAAGAAAAATTCAAACGGGTGCAAGGGATCACTTTCAGAAGATACTGAATG ACCATGAAAAGATTAAGTTGCAACTAGAATCTCACAAAAAAGAGCTTGAGATGCGTGGATCAGAATTGGAGAAGCGTGAAGCCAAAAATGAAAGTGACAG ACGAAGTCTTTCTGAAGAGATTGAAAAGAATGCAGTTAGAAACAGCTCACTTGAGTTAGCTGCTTTGGAGCAACAAAAGGCTGATGAGGATGTCTTAAAA CTAGCTGAAGATCAGAAGAGACAAAAAGAGGAACTTCACAATAGAATCATTAGATTGGAAAAGCAACTGGATGCAAAACAAGCACTGGAGTTGGAAATAG AGCGGCTCAGAGGGGCATTAAATGTGATGAAGCACATGGAGGATGATGGTGATGTAGAAGTTCTGAGAAAGATGGATGCGATAATAAAGAATTTGAGAGA AAAGGAAGGAGAACTCAATGATTTAGAAGCTCTTAACCAAACTCTTATTGTAAGGGAACGCAAGAGCAATGACGAGCTTCAGGATGCCCGCAAAGAACTA ATTAATGGCTTGAAAGAAATATCAAATCGAGCTCATATTGGTGTAAAGAGAATGGGAGAACTTGACAGTAAACCATTCCTTGAAGCAATGAAGAGAAAAT ATAACAATGAAGAAGCAGAGGATAGAGCTTCAGAAATTTGCTCATTGTGGGAGGAATATCTTAAAGATCCAGATTGGCATCCTTTCAAAGTTGTTATGGT TGATGGGAAACATCAGGAAATAATTGATGAAGAAGATGAAAAATTAAGCCGCCTGAGGGATGAGATGGGTGATGAAGCTTGCATGTCTGTGACGACATCC TTAATTCAGGTAAATGAATACAACCCCAGTGGCAGATATATAATCTCAGAGTTGTGGAACTACAAAGAAGGGAAAAAGGCTACCCTGGGAGAGGGGGTCT CATTTTTATTGAGCAGATGGAAAGCACTTAAGCGCAAGAGGGAAGGTTGA
AA sequence Show only first row Show all	>Potri.010G202700.2 pacid=42797742 polypeptide=Potri.010G202700.2.p locus=Potri.010G202700 ID=Potri.010G202700.2.v4.1 annot-version=v4.1 MDHSSDEEIDASGSDSEMDEYENEAYEELKDGKLRVKISDETFACPFCPQKKRQAYLYKDLLQHASGVGKSRSQKRSTKEKANHLALVKYLEKDLTAAGR TSKPVGETDPHSDCSHVEKMDVSQSEMDNCEDKSYEELKNGNHQVKISDETFTCPYCPTKKRKRDYAYQDLLQHATGVGKSLSEKRTAKEKADHLALVKY LEKDLAAAGSSSKPAGKTENLSSCSQNDKFVWPWTGIAVNLPTRRAEDGRFVGESGSKFRDELKSRGFNPTRVHPLWNFRGHSGTAVVEFNKDWPGLHNA ISFEKAYEADQQGKKEWFASSGEKSGIYCWVARADDYNSNNIIGEHLRKIGDVRTISDLIEEEARKQDKLVFNLTNVIETKNRYLKEMELRCSETSASLN KLVQEKEKLLHAYNEEIRKIQTGARDHFQKILNDHEKIKLQLESHKKELEMRGSELEKREAKNESDRRSLSEEIEKNAVRNSSLELAALEQQKADEDVLK LAEDQKRQKEELHNRIIRLEKQLDAKQALELEIERLRGALNVMKHMEDDGDVEVLRKMDAIIKNLREKEGELNDLEALNQTLIVRERKSNDELQDARKEL INGLKEISNRAHIGVKRMGELDSKPFLEAMKRKYNNEEAEDRASEICSLWEEYLKDPDWHPFKVVMVDGKHQEIIDEEDEKLSRLRDEMGDEACMSVTTS LIQVNEYNPSGRYIISELWNYKEGKKATLGEGVSFLLSRWKALKRKREG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Potri.010G202700 [exp]	0	1
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Potri.002G108000 [exp]	1.41	0.7432	Pt-IAA8.4
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.006G106500 [exp]	1.73	0.7381
AT5G50010	bHLH		sequence-specific DNA binding ...		Potri.005G158100 [exp]	3.16	0.6840
AT5G57250			Pentatricopeptide repeat (PPR)...		Potri.018G143800 [exp]	5.29	0.7440	CYP71.3
AT1G13790		FDM4	factor of DNA methylation 4, X...		Potri.010G184800 [exp]	5.91	0.7208
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.017G048000 [exp]	6.00	0.7264
					Potri.001G426750 [exp]	8.77	0.7170
AT1G77460			Armadillo/beta-catenin-like re...		Potri.005G180100 [exp]	14.69	0.6862
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.012G087100 [exp]	20.39	0.6662
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.005G230800 [exp]	23.66	0.6930

Compare expression of checked genes

Potri.010G202700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.