Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55480 1244 / 0 AP-3beta, PAT2 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) AT4G11380 119 / 3e-27 Adaptin family protein (.1.2) AT4G23460 119 / 4e-27 Adaptin family protein (.1) AT5G11490 76 / 1e-13 adaptin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101400 [exp] 120 / 2e-27 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.003G130400 [exp] 120 / 3e-27 AT4G23460 1471 / 0.0 Adaptin family protein (.1) Potri.006G243100 [exp] 81 / 3e-15 AT5G11490 1355 / 0.0 adaptin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040289 [exp] 1392 / 0 AT3G55480 1331 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10023408 [exp] 1386 / 0 AT3G55480 1320 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10032286 [exp] 120 / 2e-27 AT4G23460 1567 / 0.0 Adaptin family protein (.1) Lus10024654 [exp] 120 / 2e-27 AT4G23460 1560 / 0.0 Adaptin family protein (.1) Lus10017508 [exp] 120 / 2e-27 AT4G23460 1565 / 0.0 Adaptin family protein (.1) Lus10028775 [exp] 119 / 8e-27 AT4G23460 1556 / 0.0 Adaptin family protein (.1) Lus10022125 [exp] 86 / 2e-16 AT5G11490 1337 / 0.0 adaptin family protein (.1.2) Lus10011675 [exp] 85 / 2e-16 AT5G11490 897 / 0.0 adaptin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01602 [poplar] [flax] Adaptin_N Adaptin N terminal region CL0020 [poplar] [flax] PF14796 [poplar] [flax] AP3B1_C Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Representative CDS sequence Show only first row Show all	>Potri.010G202800.1 pacid=42797477 polypeptide=Potri.010G202800.1.p locus=Potri.010G202800 ID=Potri.010G202800.1.v4.1 annot-version=v4.1 ATGTTTACACAATTTGGTGCCACAGCTGACACACTGAGCAAGGCATCAACACTCATGTTTCGGTTCGGCACCGACGCTCACTTATACGACGATCCAGAAG ACGTGAACATCGCACCCTTACTCGATAGCAAATTCGACTCCGAGAAATGCGAAGCTCTTAAACGCCTCCTCGCTCTCATCGCTCAAGGCTTCGACGTTTC CAATTTCTTCCCTCAGGTTGTTAAAAATGTGGCATCTCAATCACTGGAAGTTAAGAAGCTGGTTTACTTGTACCTGCTACACTATGCTGAGAAGCGTCCA AATGAAGCATTGCTATCAATCAATTCCTTCCAAAGGGACCTGGGAGATACAAATCCATTGGTGAGAGCATGGGCATTGCGTACTATGGCTGGAATTCGCT TACATGTAATAGCACCACTTGTTCTGGTGGCTGTGGGAAAATGTGCCAAGGATATGGCTGTTTATGTGAGAAAATGTGCTGCCAATGCTCTTCCTAAGTT GCATGATTTGTACCTCGAGGAAAATTCCTCTACGATTGAAGAGATTGTTGGAACATTGTTAAGCGACAGTTCACCTGGAGTAGTTGGAGCTGCTGCTGCG GCGTTTACTTCTGTGTGTCCAAATAATTATTCTTTGATTGGGAGAAGATATAGAAGGTTATGTGAGATTCTTCCCGATGTGGAAGAGTGGGGTCAGATAG TATTGATTGGAATACTTTTGCGCTACGCAATAGCAAGGCATGGCCTTGTGAAAGAATCCATAATGTTCTCTTTACATGGAAGAGAAAGATCCCATTCTGA AAAGGATGATTCAGATGATGACTTTGCATTTAAAAATGATGTCAGTGGCACGAGCGGGAAGTATGATTCTGATTTGGCACGGACGATCTCTAGATGTTAT ATTGAAGGGCCTGATGAATACTTGTCAAGGTCAAGTTATGCTAACAGGATTTCCTTTGAATTCAATGAAGCAAAATTTACGTCTGGCAGAAGTAATGATG AGGTGAAAATCCTACTTCAGGGTACATCTCCTCTGCTATGGAGCAACAATAGTGCAGTGGTTGTGGCAGCAGCTGGTGTACACTGGATCATGGCTCCAAC GGAGGAAGTCAAAAGAATTGTTAAACCACTTTTGTTTTTGCTTAGATCATCTAACACTTCAAAATATGTGGTCCTTTGCAACATTCAAGTGTTTGCTAAA GCAATGCCTTCTCTCTTTTCTCCGTACTTCGAAGACTTCTTTGTAGTTTCTTCAGATTCATACCAAATAAAAGCTCTGAAGCTGGAGATTCTTTGTTCTA TCGCTACTGATTCATCTATCTCATCCATCTTCAAAGAGTTTCAGGATTACATTAGAGATCCAGACAGGAGATTTTCAGCTGACGCTGTTGCTGCTATTGG TTTATGTGCAAAACAAATTCCTAATATGGCCAGCACATGCTTGGAAGGACTGTTGGCTCTGGCTAAACAGGATTTGTCAACCTGTGACCCTGGGTCCGCT AATGGAGAAGCTGGTATTCTAATTCAAGCTATAATGTCAATTAAATCAATTATTACACAAGATCCCCCCACTCATGAAAAGGTTGTAATCCAGTTGGTCC GCAGTTTGGATTCAATCGAAGTGCCAGCAGCCCGTGCAACAATAATTTGGATGATAGGAGAGTACAGGAATTTAGGGGAGATAATCCCAAGGATGCTAAC CATTGTACTGAAGTATCTTGCTTGGAGCTTTACTTCAGAAGCATTGGAAACAAAGCTTCAGATTCTTAACACTACCGTTAAGGTGCTATCAGGTGCAAAA GGGGAAGAAATGCAGACATTCAAAAAACTAGGGAGCTACGTGATTGAACTAGCTGAATGTGATTTGAACTATGATGTTCGCGACAGAGCTCGCTTTTTGA AAAAACTTCTGCCGTGCAGTTTAGATTGTGGAGAGCTGGAGCTAGATACGAACTGTCCACCCAAGAAGCAGGACCTGCCACAAGTACTTGCAGAATGCAT GTTTCAGGGACAAGCTAGACAACTGTCACCTGAAAGTATGGATTATCGGGTCTATCTTCCTGGATCTCTCTCACAGATAGTCCTTCATGCAGCTCCAGGA TATGAGCCTCTCCCAAAACCTTGCAGTGTTCTCGATCACGAGCTTGATACAAATGTGATTCGTGGTGTGGACACACTAGGTGAGGGGGCAGATGGCACTG ACTCATTATCTGGATCATCATATGAGGAAAGTGCTTCTGATTATAGCTCTGAACGTTCTATGACTGTTTCAAGTGGGGATGGTGGCAGTGATGAGACTAG TTCAACAAGTGAGGTTGACAACACTGATCCATTGATTCAGTTGTCAGATACTGGTGATGCTAACCAAAATCAGAATGGAGCTCCTCAATCTGCTTCTACT GATTTGGAGGAGCTGATGTCAAAGAGATCTCTAGAGACATGGTTGGATGCGCAGCCTGGTTTATCAATCCTGAGCACATCGGAACAAAGTCAACTCCGTA AATCTTCAGCTAGAATCTCCATAAGGGATATTAGCAGTCGAGTTAAACCTAAAAGCTACAGACTCTTAGATCCTGCTAATGGAAATGGATTAAAGGTGGA TTATTCATTTTCACCAGAAATATCAAGCATATCACCCTTACTTGTTAGTGTAGAAGTTTCCTTTGAGAACTGTACCGATGAGACCATTTCAGAAGTAGCC TTGGTGGATGAGGAATCAAGCAAAGCTTCAGATTCTTCTGAGAGCTCACCATCTCATAAGGATGTGCCAACACTGGTTCCTATGGAAGAGATTGCTTCAC TGGAACCTGGTCAGACAGTAAAAAAGATTGTCTATGTTTGTTTCCATCACCATCTATTGCCTCTGAAGCTGGCGTTATATTGCAATGGCAAGAAGCTTTC TGTTAAGTTGCGGCCTGACATTGGATATTTTGTGAAACCACTTCCAATGGATGTTGAAGCTTTCACAAATAAGGAATCTCGTCTCCCAGGAATGTTTGAG TACACCAGGAGTTTCACCTTCATAGACCACATTGGGGAGCTCAACAAGGAAAGTGGTGACAATGCGTTAGTGAAAGACAATTTTCTATTGGTCTGTGAAA GCCTAGCATTAAAGATGCTTAGCAATGCAAATTTTTCTCTCGTATCTGTTGACATGCCAATTTCTGCCAAACATGATGATGTCTCTGGTTTGTGCTTACG ATTCAGTGGTGAAATTCTGAGCAACTCAATGCCTTGCTTAATTACCATTACTGCTGAAGGTAAATGCTCTGAACCGTTAAATGTGTTGGTAAAAGTCAAC TGTGAGGAAACTGTATTTGGCCTAAATCTGTTGAATAGGATCGTCAATTTCCTTAGTTGA
AA sequence Show only first row Show all	>Potri.010G202800.1 pacid=42797477 polypeptide=Potri.010G202800.1.p locus=Potri.010G202800 ID=Potri.010G202800.1.v4.1 annot-version=v4.1 MFTQFGATADTLSKASTLMFRFGTDAHLYDDPEDVNIAPLLDSKFDSEKCEALKRLLALIAQGFDVSNFFPQVVKNVASQSLEVKKLVYLYLLHYAEKRP NEALLSINSFQRDLGDTNPLVRAWALRTMAGIRLHVIAPLVLVAVGKCAKDMAVYVRKCAANALPKLHDLYLEENSSTIEEIVGTLLSDSSPGVVGAAAA AFTSVCPNNYSLIGRRYRRLCEILPDVEEWGQIVLIGILLRYAIARHGLVKESIMFSLHGRERSHSEKDDSDDDFAFKNDVSGTSGKYDSDLARTISRCY IEGPDEYLSRSSYANRISFEFNEAKFTSGRSNDEVKILLQGTSPLLWSNNSAVVVAAAGVHWIMAPTEEVKRIVKPLLFLLRSSNTSKYVVLCNIQVFAK AMPSLFSPYFEDFFVVSSDSYQIKALKLEILCSIATDSSISSIFKEFQDYIRDPDRRFSADAVAAIGLCAKQIPNMASTCLEGLLALAKQDLSTCDPGSA NGEAGILIQAIMSIKSIITQDPPTHEKVVIQLVRSLDSIEVPAARATIIWMIGEYRNLGEIIPRMLTIVLKYLAWSFTSEALETKLQILNTTVKVLSGAK GEEMQTFKKLGSYVIELAECDLNYDVRDRARFLKKLLPCSLDCGELELDTNCPPKKQDLPQVLAECMFQGQARQLSPESMDYRVYLPGSLSQIVLHAAPG YEPLPKPCSVLDHELDTNVIRGVDTLGEGADGTDSLSGSSYEESASDYSSERSMTVSSGDGGSDETSSTSEVDNTDPLIQLSDTGDANQNQNGAPQSAST DLEELMSKRSLETWLDAQPGLSILSTSEQSQLRKSSARISIRDISSRVKPKSYRLLDPANGNGLKVDYSFSPEISSISPLLVSVEVSFENCTDETISEVA LVDEESSKASDSSESSPSHKDVPTLVPMEEIASLEPGQTVKKIVYVCFHHHLLPLKLALYCNGKKLSVKLRPDIGYFVKPLPMDVEAFTNKESRLPGMFE YTRSFTFIDHIGELNKESGDNALVKDNFLLVCESLALKMLSNANFSLVSVDMPISAKHDDVSGLCLRFSGEILSNSMPCLITITAEGKCSEPLNVLVKVN CEETVFGLNLLNRIVNFLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Potri.010G202800 [exp]	0	1
AT5G16280			Tetratricopeptide repeat (TPR)...		Potri.016G068800 [exp]	4.69	0.7688
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.003G001000 [exp]	5.47	0.7658	Pt-ARF1.11
AT2G01690			ARM repeat superfamily protein...		Potri.008G134600 [exp]	10.24	0.7487
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.011G169300 [exp]	12.64	0.7043	WRKY2.1
					Potri.005G174900 [exp]	16.12	0.6865
AT2G39750			S-adenosyl-L-methionine-depend...		Potri.010G199300 [exp]	17.49	0.6756
AT5G24340			3'-5' exonuclease domain-conta...		Potri.015G009500 [exp]	18.11	0.6637
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	19.07	0.7140
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Potri.005G209000 [exp]	19.89	0.7374
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014400 [exp]	23.49	0.7347

Compare expression of checked genes

Potri.010G202800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.