Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55470 163 / 3e-52 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G63220 96 / 7e-26 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT4G00467 77 / 7e-18 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G47710 60 / 1e-11 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT4G21160 56 / 1e-09 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT3G07940 55 / 3e-09 Calcium-dependent ARF-type GTPase activating protein family (.1) AT1G70800 52 / 7e-09 EHB1 ENHANCED BENDING 1, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G05330 50 / 8e-08 AGD13 ARF-GAP domain 13 (.1) AT1G05500 50 / 2e-07 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G37740 49 / 2e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G203000 [exp] 213 / 5e-72 AT3G55470 167 / 6e-54 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G155600 [exp] 112 / 3e-32 AT1G63220 202 / 1e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.014G084100 [exp] 78 / 3e-18 AT4G00467 194 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G372000 [exp] 60 / 5e-11 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.017G125500 [exp] 56 / 3e-10 AT3G17980 249 / 6e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G089500 [exp] 55 / 8e-10 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G131500 [exp] 54 / 2e-09 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.011G098500 [exp] 54 / 7e-09 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.016G005300 [exp] 52 / 1e-08 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040291 [exp] 178 / 6e-58 AT3G55470 191 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10023410 [exp] 136 / 1e-41 AT3G55470 149 / 5e-47 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10029565 [exp] 100 / 3e-27 AT1G63220 221 / 1e-75 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10002235 [exp] 100 / 4e-27 AT1G63220 216 / 2e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10014780 [exp] 78 / 6e-18 AT4G00467 168 / 1e-52 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039113 [exp] 55 / 9e-10 AT5G47710 239 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10038745 [exp] 54 / 2e-09 AT5G47710 241 / 1e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10023265 [exp] 53 / 1e-08 AT4G21160 495 / 3e-177 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Lus10038539 [exp] 53 / 1e-08 AT4G21160 491 / 4e-176 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Lus10016347 [exp] 53 / 2e-08 AT3G07940 478 / 8e-164 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.010G203100.1 pacid=42798779 polypeptide=Potri.010G203100.1.p locus=Potri.010G203100 ID=Potri.010G203100.1.v4.1 annot-version=v4.1 ATGGCCGTTGGAATATTGGAAGTGAAGCTGGTGAAGGCAAAAGGCCTTGGAAACCCTGATTTCTTTGGTTTATCATGTTACTGCTCCAGCTCTTTGACTA ACATGGACCCGTATGTTCTGGTAAAATACAAAAGCCAAGAGCGCAAGAGCAAAGTAGCAAGAGGTCAAGGTGGGCGTCCAGTGTGGAATGAGACTCTCAC ATTCAAGGTAGAGTATCCAGGGCAAGGTGGCAACTATAAGCTCATTCTTAAAATCATGGACAAGGACACCTTCTCTGCTGATGATTCTGTCGGAGAAGCC ACGATTTACGTTAAAGATTTGTTGGCATTAGGAGTGGAGAAAGGAACTGCTGAACTACAAACTCAGAAGTATAGAGTGGTTAATGCTGACAAATCTTATC GTGGAGAGATTCAAGTTGGCGTCACTTTTACCCTCAAGGCAGAAGAGGAAGATGCTGGAGAAGATTATGGTGGATGGAGGCAAAGCTCTGTTTAG
AA sequence Show only first row Show all	>Potri.010G203100.1 pacid=42798779 polypeptide=Potri.010G203100.1.p locus=Potri.010G203100 ID=Potri.010G203100.1.v4.1 annot-version=v4.1 MAVGILEVKLVKAKGLGNPDFFGLSCYCSSSLTNMDPYVLVKYKSQERKSKVARGQGGRPVWNETLTFKVEYPGQGGNYKLILKIMDKDTFSADDSVGEA TIYVKDLLALGVEKGTAELQTQKYRVVNADKSYRGEIQVGVTFTLKAEEEDAGEDYGGWRQSSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55470			Calcium-dependent lipid-bindin...		Potri.010G203100 [exp]	0	1
AT4G37160		SKS15	SKU5 similar 15 (.1)		Potri.007G038200 [exp]	1.00	0.9837
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.012G092200 [exp]	1.41	0.9748
AT2G43480			Peroxidase superfamily protein...		Potri.007G132800 [exp]	4.89	0.9569
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028100 [exp]	5.47	0.9504
AT3G10720			Plant invertase/pectin methyle...		Potri.008G011100 [exp]	6.00	0.9564
AT1G50720			Stigma-specific Stig1 family p...		Potri.001G356600 [exp]	6.92	0.9420
					Potri.018G119000 [exp]	7.54	0.9157
					Potri.014G124800 [exp]	8.88	0.8722
AT1G63410			Protein of unknown function (D...		Potri.001G106300 [exp]	9.89	0.9261
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Potri.011G118600 [exp]	9.89	0.9426

Compare expression of checked genes

Potri.010G203100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.