Plant FIBer expression Database

Potri.010G203300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39670 238 / 2e-75 Radical SAM superfamily protein (.1.2)
AT3G19630 71 / 2e-13 Radical SAM superfamily protein (.1)
AT1G50050 55 / 1e-08 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1)
AT1G60230 45 / 3e-05 Radical SAM superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G056500
[exp]
273 / 3e-89 AT2G39670 622 / 0.0 Radical SAM superfamily protein (.1.2)
Potri.001G294900
[exp]
67 / 2e-12 AT3G19630 577 / 0.0 Radical SAM superfamily protein (.1)
Potri.010G040700
[exp]
41 / 0.0008 AT1G60230 583 / 0.0 Radical SAM superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002698
[exp]
228 / 1e-71 AT2G39670 595 / 0.0 Radical SAM superfamily protein (.1.2)
Lus10000953
[exp]
225 / 2e-67 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2)
Lus10005409
[exp]
67 / 5e-12 AT3G19630 568 / 0.0 Radical SAM superfamily protein (.1)
Lus10020989
[exp]
66 / 1e-11 AT3G19630 569 / 0.0 Radical SAM superfamily protein (.1)
Lus10013005
[exp]
44 / 0.0001 AT1G60230 582 / 0.0 Radical SAM superfamily protein (.1)
Lus10000081
[exp]
43 / 0.0001 AT1G60230 332 / 9e-114 Radical SAM superfamily protein (.1)
Lus10029159
[exp]
43 / 0.0003 AT1G60230 468 / 2e-163 Radical SAM superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.010G203300.2 pacid=42797060 polypeptide=Potri.010G203300.2.p locus=Potri.010G203300 ID=Potri.010G203300.2.v4.1 annot-version=v4.1
ATGATTGCCACTTCAATGTCTCTGCTCCAGCACGTGTGTTCCGTGCCAATCGCACGTGCCATGCGACCTCGTTCCCTTACCATCAGATCCTCTCGCAGCC
TCTCCACCACCACCGCTTCCTCCTCCGCTCCATCACGTGCCTCTCACTTGGACGCATTCGGCAAGTCCGAGTCATCATTAAAGCTGAAATGCCGCCATGG
TTCGTTTGTTTGTGCGGTGCGCCACACCAACAAACTGGCAATTAGAAATGATCTTCAAGAAGCTGGATGGAAAGTTGGGCGATCACCAATTTTTCGTACT
GTAACCGCAGCTGATGGCACGGTTAAGTTATTGATAATACTGGGGGATAACAGATTGATTGAAACTGCTGGTATTCAGTTGAAGATAAGAAAGGATGTGC
AAATTGGGCAAAGAATGATCACAATATCAATCGTGGGGGTTCCAAACACTATCCAAAAGCTGGCTTCTCATAAACTTCAGTCAACATTGGCCTTCAGCTC
ACGTGCTCCGAACCAGAAACTTAGAGAATCAATTGTTCCAAGTGCAAAATCCTACCCTCTAGAAGCAATTATGAAAGATTGCAAGGAGGCAGCTGGGATC
AATGATAGAGTAGAGCATGCAAAAGAACTTGCCGACCTACTTCATCAGTGGGAACGTGGTCATCATGTGAATCTGATACCTTTCAACCCAATTCAAGGTT
CTGATTACAAGCATCCACACAAAAAGGCGGTATGCATACCAGTCATAAACACACTGTTTTCCCCTGCTGTCACATTTGCAGCTGCTCTAGAGTCACGCAA
AATAACTGCCGGTGTGCGGCGTGTGCCAAACAAGGGGGGCCTGGATGCAAGTGCAGCTTGTGGTCAGCTAAGAAATGAATTCCAAAAGAGTCCTTTAGTC
ATGAGTTCTGACAGCTTGCAATCAGAGAAAGTTGCGGTTGCATGCTGGTGCCTTGAGGGCTCTGGTTGGTTGCTTCTCTGA
AA sequence
>Potri.010G203300.2 pacid=42797060 polypeptide=Potri.010G203300.2.p locus=Potri.010G203300 ID=Potri.010G203300.2.v4.1 annot-version=v4.1
MIATSMSLLQHVCSVPIARAMRPRSLTIRSSRSLSTTTASSSAPSRASHLDAFGKSESSLKLKCRHGSFVCAVRHTNKLAIRNDLQEAGWKVGRSPIFRT
VTAADGTVKLLIILGDNRLIETAGIQLKIRKDVQIGQRMITISIVGVPNTIQKLASHKLQSTLAFSSRAPNQKLRESIVPSAKSYPLEAIMKDCKEAAGI
NDRVEHAKELADLLHQWERGHHVNLIPFNPIQGSDYKHPHKKAVCIPVINTLFSPAVTFAAALESRKITAGVRRVPNKGGLDASAACGQLRNEFQKSPLV
MSSDSLQSEKVAVACWCLEGSGWLLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G39670 Radical SAM superfamily protei... Potri.010G203300
[exp]
0 1
AT5G51830 pfkB-like carbohydrate kinase ... Potri.014G074150
[exp]
14.42 0.6284
AT1G30500 CCAAT NF-YA7 "nuclear factor Y, subunit A7"... Potri.006G053500
[exp]
69.98 0.5856
AT3G48880 RNI-like superfamily protein (... Potri.012G137700
[exp]
85.53 0.5619
AT5G04840 bZIP bZIP protein (.1) Potri.010G242800
[exp]
88.72 0.6363
Potri.009G010450
[exp]
89.78 0.6405
AT4G18640 MRH1 morphogenesis of root hair 1, ... Potri.004G058251
[exp]
139.21 0.5996
AT2G25180 GARP ARR12 response regulator 12 (.1) Potri.006G188000
[exp]
150.36 0.5967
AT1G08650 ATPPCK1, PPCK1 phosphoenolpyruvate carboxylas... Potri.008G166500
[exp]
183.06 0.5916
AT2G26650 AKT1, ATAKT1 K+ transporter 1, K+ transport... Potri.018G071400
[exp]
222.41 0.5646 AKT1.2

Potri.010G203300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.