Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28930 541 / 0 APK1B protein kinase 1B (.1.2.3) AT1G07570 538 / 0 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 522 / 0 NAK Protein kinase superfamily protein (.1.2) AT2G39660 510 / 0 BIK1 botrytis-induced kinase1 (.1) AT3G55450 478 / 1e-168 PBL1 PBS1-like 1 (.1.2) AT2G02800 467 / 7e-164 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 459 / 8e-161 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT5G15080 449 / 1e-155 Protein kinase superfamily protein (.1) AT3G01300 444 / 8e-154 Protein kinase superfamily protein (.1) AT1G69790 439 / 3e-153 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G056400 [exp] 745 / 0 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 574 / 0 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 572 / 0 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 556 / 0 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G093700 [exp] 477 / 5e-168 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 476 / 2e-167 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.010G033800 [exp] 461 / 2e-160 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 459 / 4e-160 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 453 / 2e-157 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002697 [exp] 575 / 0 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 572 / 0 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10016537 [exp] 550 / 0 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10023794 [exp] 547 / 0 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 546 / 0 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 546 / 0 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040806 [exp] 544 / 0 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10004964 [exp] 513 / 0 AT2G28930 570 / 0.0 protein kinase 1B (.1.2.3) Lus10005462 [exp] 510 / 0 AT2G28930 569 / 0.0 protein kinase 1B (.1.2.3) Lus10012850 [exp] 458 / 3e-160 AT2G02800 614 / 0.0 protein kinase 2B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G203400.2 pacid=42797173 polypeptide=Potri.010G203400.2.p locus=Potri.010G203400 ID=Potri.010G203400.2.v4.1 annot-version=v4.1 ATGGGGTCGTGCTTCAGTGCAAGAATTAAAGCTGAGAGTCCTTCTCGAAACGGGGGGAACACAAAATATGCTGGCAAAGGTGGGAATGACAAGAGTGGGT CAAGCAGCAAGGTCTCTTCTTCCACAGTGCCTTCAACTCCTCGGACACAGGGTGAGATCTTGCAGTCCTCAAATTTGAAGAGCTTTTCCTTTAGTGAATT AAAAGCAGCCACTAGGAACTTCCGTCCTGATAGTGTGTTGGGGGAAGGTGGTTTTGGTTGTGTCTTCAAAGGGTGGATTGATGAGCATTCATTGACAGCT GCCAAGCCTGGAACAGGTACAGTTATTGCTGTAAAGAGGCTTAACCAGGAGAGTTCCCAGGGTCACCAGGAATGGTTGGCAGAAATAAACTACCTGGGCC AGCTGTATCATCCAAATCTAGTAAAATTGATCGGCTATTGCTTAGAAGATGACCACCGTCTTCTGGTTTATGAGTTTATGCCCAAGGGAAGCTTGGAGAA TCATCTTTTCAGAAGGGCTTCTTATTTTCAACCACTCTCGTGGAATCTCCGCATGAAGGTTGCCCTTGATGCTGCCAAGGGTCTAGAATATCTTCACAGT GACAAGGCGAAAGTTATATATAGAGACTTTAAGGCTTCTAATATCCTGCTCGATTCGAATTATAGAGCCAAACTCTCTGATTTTGGGTTGGCCAAGGATG GGCCAACAGGCAGTAAAAGCCATGTATCTACAAGGATCATGGGTACCTATGGTTACGCAGCTCCTGAATATATGGCAACAGGTCATCTAACTGCAAGGAG TGACGTATACAGTTTCGGGGTTGTTCTCCTTGAAATGTTATCTGGCAGACGAGCAATAGACAAAAACAGGCCCTCCAAGGAACACAATTTAGTTGAATGG GCGAGGCCTTACCTTAGCAGCAAGCGCAGAATTTTCCAAGTTATGGATGCTCGCATCCAAGGCCAGTATTCATCTAGTGATGCTCTGAAAGCAGCAAACC TTGCAATTCAATGCCTATCAACCGAACCGAAGTACAGGCCAAACATGGAAGCAGTGGTAAAAGCATTGGAACAACTTCATAATTCCAATGACAACGATGG ATCCAAGGGCTCTCGTGGTGAAAACCCCCGAAGAGTTAATCGAAGTTCAAGCAATGGTCCTAAATATCACAGGAAAAATGTCAAAGAAGTTTCCAATGGA AAACCTGCCTCTTATGCCGGGCCATATATTTCACCTCTTCGTACATAA
AA sequence Show only first row Show all	>Potri.010G203400.2 pacid=42797173 polypeptide=Potri.010G203400.2.p locus=Potri.010G203400 ID=Potri.010G203400.2.v4.1 annot-version=v4.1 MGSCFSARIKAESPSRNGGNTKYAGKGGNDKSGSSSKVSSSTVPSTPRTQGEILQSSNLKSFSFSELKAATRNFRPDSVLGEGGFGCVFKGWIDEHSLTA AKPGTGTVIAVKRLNQESSQGHQEWLAEINYLGQLYHPNLVKLIGYCLEDDHRLLVYEFMPKGSLENHLFRRASYFQPLSWNLRMKVALDAAKGLEYLHS DKAKVIYRDFKASNILLDSNYRAKLSDFGLAKDGPTGSKSHVSTRIMGTYGYAAPEYMATGHLTARSDVYSFGVVLLEMLSGRRAIDKNRPSKEHNLVEW ARPYLSSKRRIFQVMDARIQGQYSSSDALKAANLAIQCLSTEPKYRPNMEAVVKALEQLHNSNDNDGSKGSRGENPRRVNRSSSNGPKYHRKNVKEVSNG KPASYAGPYISPLRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.010G203400 [exp]	0	1
AT1G31830			Amino acid permease family pro...		Potri.003G103600 [exp]	2.82	0.8773
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.018G085200 [exp]	6.32	0.8581	RCSTG.1
					Potri.001G077040 [exp]	8.66	0.8525
AT4G35220			Cyclase family protein (.1)		Potri.001G301501 [exp]	11.74	0.8604
AT1G08410			P-loop containing nucleoside t...		Potri.009G017000 [exp]	12.24	0.8418
AT1G21000			PLATZ transcription factor fam...		Potri.005G259000 [exp]	15.09	0.8695
AT1G30650	WRKY	ATWRKY14, AR411...	WRKY DNA-binding protein 14 (....		Potri.011G157100 [exp]	16.49	0.8631	WRKY14.3
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.008G122200 [exp]	19.39	0.8590
AT3G54826			Zim17-type zinc finger protein...		Potri.008G037300 [exp]	21.09	0.8605
AT1G21000			PLATZ transcription factor fam...		Potri.002G002200 [exp]	25.21	0.8570

Compare expression of checked genes

Potri.010G203400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.