Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55430 354 / 3e-118 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 333 / 3e-110 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G46570 318 / 2e-105 Glycosyl hydrolase superfamily protein (.1) AT2G39640 291 / 1e-92 glycosyl hydrolase family 17 protein (.1) AT5G42720 275 / 8e-88 Glycosyl hydrolase family 17 protein (.1) AT1G30080 262 / 4e-83 Glycosyl hydrolase superfamily protein (.1) AT2G16230 265 / 8e-83 O-Glycosyl hydrolases family 17 protein (.1) AT1G32860 253 / 2e-79 Glycosyl hydrolase superfamily protein (.1) AT2G05790 254 / 3e-79 O-Glycosyl hydrolases family 17 protein (.1) AT2G27500 251 / 3e-79 Glycosyl hydrolase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055900 [exp] 564 / 0 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G056000 [exp] 424 / 1e-145 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G240000 [exp] 392 / 2e-132 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.012G017800 [exp] 341 / 7e-113 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.015G010100 [exp] 334 / 3e-111 AT5G24318 466 / 1e-163 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G084900 [exp] 263 / 1e-83 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G153800 [exp] 265 / 2e-83 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 265 / 3e-83 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G163700 [exp] 261 / 8e-83 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040294 [exp] 476 / 4e-166 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10005166 [exp] 374 / 1e-124 AT5G24318 385 / 1e-129 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10016539 [exp] 345 / 8e-114 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 344 / 2e-113 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 327 / 7e-108 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 328 / 8e-108 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 296 / 2e-95 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10021088 [exp] 280 / 9e-91 AT5G24318 324 / 3e-108 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023576 [exp] 271 / 7e-86 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004869 [exp] 267 / 6e-85 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.010G203800.1 pacid=42798688 polypeptide=Potri.010G203800.1.p locus=Potri.010G203800 ID=Potri.010G203800.1.v4.1 annot-version=v4.1 ATGACCGCGACTACCACCACGTCCATCACAACCGCCCTCCTCCACCTCTCCACACTCCTCCACCTCTCCACCACAGCCTTTTCGATTGGTGTCAATTATG GTACCCTAGCCAACGATCTGCCATCACCATCTCAGGTGGCCAACTTCCTTAAAACACAAACAATTATTGATAGCATCAAAATCTTTGACACCAATCCTGA CATTCTTCGCGGTTTTGCCAACACAAACATTACCGTGACTGTAACCGTTGGTAATGGTGATATTCCTGCTCTTGTTGATGCAAATGCCGCCAGCCGATGG GTTGCTAACAATATCGAGCAATTTTATCCACAAACAAGGATTAAACTCATCGCTGTTGGCAATGAAATCTTGTTTACTGGTAATAAGGAGTGGATTTCTC ATCTTGTACCCTGCATTAAGTCCTTGCATCAGGCTCTTGTTCGTGCTGGGATCAACGATGTTAAGGTGTCAACTCCTTACACCCTTGGGATCTTGCAAAA TTCTGTGCAACCAAGTGCTGCCCGGATTAAGCCTGCCTATGGCAAAGTCGTATTTGCACCCATGCTCGAATTTCTACGTCAAACCAAGTCACCCCTTTTG GTTAACCCATACCCTTATTTTAGCTACTCTCCGAGCATGGAAGACTACATCCTTTTCAAGCCTAACCCTGGTATCCATGACGACAACACCAACATTACCT ACACTAACATGTTCGTTGCAATGATGGATGCAGTTTATTCGGCAATAAAGGCAATGGGTTACGATGACTTGGACATTGTTGTGGCCGAGTCTGGTTGGCC CTCACTCGGCGACCCGAACCAGCCCATGTGTACGGTGGAGAACGCAGTGTTATATAATAAGAACATGATTAAGGTTGTTACTTCGGGGGAGGGGACTCCT TTGATGCCCAAACGGCGGTTCGAGACATATGTTTTTGCATTGTTTAATGAGAATCTTAAGCCTGGAACAGCGGCAGAGAGGAATTGGGGCTTGTTTAGGC CAGATTTTAGCCCGGTTTATGATGTTGGCATTTTGAGCAATATTGGAAAGTCCACTGGTTCAAGCCCGTCGCCTACAAAAAGCCCATTCACTGGTCCAAG CACATCGCCTACAAAACGCCCACCCACTGGTTCAAGCTCATCGCCTACAAAAAGCCCATCCACTGGTTCAAGCCCGTCCACTGACTCGAGCCCATCACCC ACAACAAGCCCATCTACTGGCTCAAGCCCAGCACCCACAACAAGCAAGACATGGAGTGAGCCCAAAGCGGACGCCAGTGACGAAGCATTACAAGCGAACA AAGACTATGTGTGCAGCCAGGGGGCGCATTGCAAGCCTATTCAAACTGGCGGTGCCTGTTTCAATCCAAACAATATCAGGTCCCATGCAGCATTGTTAAT CCCACTCATCATGATGTGGTTTGTATATATATAG
AA sequence Show only first row Show all	>Potri.010G203800.1 pacid=42798688 polypeptide=Potri.010G203800.1.p locus=Potri.010G203800 ID=Potri.010G203800.1.v4.1 annot-version=v4.1 MTATTTTSITTALLHLSTLLHLSTTAFSIGVNYGTLANDLPSPSQVANFLKTQTIIDSIKIFDTNPDILRGFANTNITVTVTVGNGDIPALVDANAASRW VANNIEQFYPQTRIKLIAVGNEILFTGNKEWISHLVPCIKSLHQALVRAGINDVKVSTPYTLGILQNSVQPSAARIKPAYGKVVFAPMLEFLRQTKSPLL VNPYPYFSYSPSMEDYILFKPNPGIHDDNTNITYTNMFVAMMDAVYSAIKAMGYDDLDIVVAESGWPSLGDPNQPMCTVENAVLYNKNMIKVVTSGEGTP LMPKRRFETYVFALFNENLKPGTAAERNWGLFRPDFSPVYDVGILSNIGKSTGSSPSPTKSPFTGPSTSPTKRPPTGSSSSPTKSPSTGSSPSTDSSPSP TTSPSTGSSPAPTTSKTWSEPKADASDEALQANKDYVCSQGAHCKPIQTGGACFNPNNIRSHAALLIPLIMMWFVYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55430			O-Glycosyl hydrolases family 1...		Potri.010G203800 [exp]	0	1
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.017G089250 [exp]	40.98	0.7032
AT1G26090			P-loop containing nucleoside t...		Potri.008G115401 [exp]	51.57	0.6914
AT4G00350			MATE efflux family protein (.1...		Potri.002G161200 [exp]	68.55	0.6415
					Potri.017G046301 [exp]	133.41	0.6393
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.010G137100 [exp]	136.16	0.6337

Compare expression of checked genes

Potri.010G203800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.