Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55420 253 / 7e-86 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055800 [exp] 365 / 7e-130 AT3G55420 254 / 4e-86 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005165 [exp] 295 / 6e-102 AT3G55420 245 / 2e-82 unknown protein Lus10023413 [exp] 274 / 1e-93 AT3G55420 258 / 3e-87 unknown protein Lus10040295 [exp] 270 / 6e-92 AT3G55420 249 / 4e-84 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G203900.1 pacid=42798294 polypeptide=Potri.010G203900.1.p locus=Potri.010G203900 ID=Potri.010G203900.1.v4.1 annot-version=v4.1 ATGGAAGAGAAGGAGAAGAAGAAACACAATAAGAAGCAAAAACACCAACACCCAAACCAGCAAACCAGCAAGCCATCATCAGATTTTTCTTTCAAGCCTA GTTCAGAAGTGAAGGGTCTTCGTTTTGGAGGCCAGTTCATTGTAAAATCCTTCACAATCCGGCGAGCAAGGCCTCTTGAGCTGCTAAAAGTCCTTTCCTA TCCAGCAACGAACAAGAACAGCAACAACAGTAAGGCCGCTTTCCCTTCAACAACAGCTTTTCTGCCTACAAACTTCACTATATTAGCACACCATGCTTGG CATACCTTAACACTTGGTCTTGGTACCAAGAAATCCAAAGTACTACTATTTGTCTTTGAATCCGAGTCCATGAAACTGGCTGTTGACAGAATATGGCCAC CAGAGATACCACTTGGAGAAGTGAACAAGAAACTTATAAGAGGCCTGAATGGATGTGAAATGGCAAGGTTTAAGTTTAGAAAAGGATGCATTACTTTTTA TGTCTATGCAGTTAGACGTGTAGGCAACCTGGGATTCTCTTGTGCAGATGATTTAAAGATGATATTACAGTCTGTGGTTGCCCTCAATGATTTCTTGGAT CACACTGCTATGCTTGCCATGCCTCATCAGAGAAGCATCAACTATGCATCACCCCAGGTCGCTATGGCTCACTAG
AA sequence Show only first row Show all	>Potri.010G203900.1 pacid=42798294 polypeptide=Potri.010G203900.1.p locus=Potri.010G203900 ID=Potri.010G203900.1.v4.1 annot-version=v4.1 MEEKEKKKHNKKQKHQHPNQQTSKPSSDFSFKPSSEVKGLRFGGQFIVKSFTIRRARPLELLKVLSYPATNKNSNNSKAAFPSTTAFLPTNFTILAHHAW HTLTLGLGTKKSKVLLFVFESESMKLAVDRIWPPEIPLGEVNKKLIRGLNGCEMARFKFRKGCITFYVYAVRRVGNLGFSCADDLKMILQSVVALNDFLD HTAMLAMPHQRSINYASPQVAMAH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55420			unknown protein		Potri.010G203900 [exp]	0	1
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Potri.002G207500 [exp]	3.60	0.8599
AT2G35910			RING/U-box superfamily protein...		Potri.016G067900 [exp]	7.74	0.8509
AT5G39420		CDC2CAT	CDC2C (.1)		Potri.017G088200 [exp]	8.66	0.8537
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Potri.012G044600 [exp]	10.19	0.8136
AT1G19430			S-adenosyl-L-methionine-depend...		Potri.002G260600 [exp]	12.16	0.8522
AT4G17920			RING/U-box superfamily protein...		Potri.001G140900 [exp]	12.48	0.8543
AT1G30690			Sec14p-like phosphatidylinosit...		Potri.001G461400 [exp]	15.49	0.8420
AT5G20600			unknown protein		Potri.012G036500 [exp]	17.66	0.8339
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.001G065900 [exp]	17.66	0.8310
AT3G03000			EF hand calcium-binding protei...		Potri.003G095700 [exp]	17.94	0.8174

Compare expression of checked genes

Potri.010G203900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.