Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39630 509 / 0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) AT1G20575 55 / 1e-08 DPMS1 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055700 [exp] 613 / 0 AT2G39630 499 / 5e-179 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.005G250900 [exp] 60 / 3e-10 AT1G20575 447 / 6e-162 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G010300 [exp] 59 / 6e-10 AT1G20575 452 / 1e-163 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023414 [exp] 528 / 0 AT2G39630 504 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10001691 [exp] 518 / 0 AT2G39630 479 / 3e-171 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10040296 [exp] 518 / 0 AT2G39630 476 / 3e-170 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10005164 [exp] 411 / 4e-141 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10030748 [exp] 55 / 1e-08 AT1G20575 450 / 9e-163 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10013228 [exp] 54 / 6e-08 AT1G20575 450 / 1e-162 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF00535 [poplar] [flax] Glycos_transf_2 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Potri.010G204000.1 pacid=42799538 polypeptide=Potri.010G204000.1.p locus=Potri.010G204000 ID=Potri.010G204000.1.v4.1 annot-version=v4.1 ATGGGGTTGCTATGGACAATTGCAGAGGTCTTGGTAGCCTTGATCTTGATCATAGCCTCGTTCTTGCTTACCGCAATCGTATCGGAAGCTTATAGGAGAA GACACAATAACACGCATGTTGATGCTCATGCTATCTTCGAGGATCCAAATTCCTTGAAACAGGTTCCATGTCCTCATATTCATGATCCGGCTGAGAAATA TTTATCTTTGGTTATCCCTGCATTTAATGAAGAGTATAGACTTCCAGGAGCTCTTGATGAAACCATCAATTATCTTCAACAGCGTGCAGCAAAGGACAAG TCATTTACTTATGAGGTGGTGATCGTTGATGATGGAAGTGCTGATGCAACAAAACGAGTAGCTTTTGACTTTGTAAAGAAATACACAGTGGACAATGTAA GGATTATCCTTCTTGGTAGAAATCATGGCAAAGGAGAGGCGATTAGAAAAGGCATGCTTCATTCACGTGGTGAACTACTTTTAATGCTGGATGCTGATGG GGCAACCAAGGTTGCTGACTTAGAGAAACTAGAAAACCAGATCCATGCAGTTGCTAGAAAGGAGTTCTGTTTAGGAGAGTCAGCAGCTAGTGATTCAAGT TTTAGAATATCTGATATGCCACTTGCTGCCTTTGGTTCCCGTGCTCACCTTGAGGAGAAGGCTTTGGCTACAAGGAAGTGGTACCGCAATTTTCTTATGA AAGGCTTTCATCTTGTGGTTCTCTTGACTGCTGGTTCTGGAATTCGTGATACACAGTGTGGTTTTAAGATGTTCACCAGGGCTGCTGCCAGAAAGCTGTT CACAAACATCCGGCTGAAGAGATGGTGCTTCGATGTTGAGTTGATTTTCCTATGCAAATGGTTTGGTATCCCGATGATTGAGATTTCTGTAAACTGGTCT GAAATTCCAGGATCCAAGGTGAATCTTTTAAGCATTCCCAACATGCTCTGGGAGCTAGCGCTCATGTCCGTGGGATATAGAACTAGAATGTGGAAAATTA GCAACTGA
AA sequence Show only first row Show all	>Potri.010G204000.1 pacid=42799538 polypeptide=Potri.010G204000.1.p locus=Potri.010G204000 ID=Potri.010G204000.1.v4.1 annot-version=v4.1 MGLLWTIAEVLVALILIIASFLLTAIVSEAYRRRHNNTHVDAHAIFEDPNSLKQVPCPHIHDPAEKYLSLVIPAFNEEYRLPGALDETINYLQQRAAKDK SFTYEVVIVDDGSADATKRVAFDFVKKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVADLEKLENQIHAVARKEFCLGESAASDSS FRISDMPLAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVLLTAGSGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELIFLCKWFGIPMIEISVNWS EIPGSKVNLLSIPNMLWELALMSVGYRTRMWKISN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39630			Nucleotide-diphospho-sugar tra...		Potri.010G204000 [exp]	0	1
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.013G018800 [exp]	4.79	0.9543
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036732 [exp]	4.89	0.9476
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.005G010400 [exp]	5.65	0.9505
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.009G031200 [exp]	6.92	0.9436
AT5G36290			Uncharacterized protein family...		Potri.013G086700 [exp]	9.79	0.9472
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.001G152000 [exp]	9.79	0.9369
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Potri.001G147900 [exp]	10.39	0.9433
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075450 [exp]	10.95	0.9468
AT4G33945			ARM repeat superfamily protein...		Potri.004G144100 [exp]	12.40	0.9448
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.005G060800 [exp]	15.09	0.9454

Compare expression of checked genes

Potri.010G204000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.