Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08670 112 / 2e-30 ENTH/VHS family protein (.1) AT3G46540 105 / 1e-26 ENTH/VHS family protein (.1) AT3G23350 81 / 5e-18 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055600 [exp] 275 / 2e-93 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1) Potri.001G239200 [exp] 144 / 2e-41 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1) Potri.009G030500 [exp] 137 / 1e-38 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040824 [exp] 135 / 5e-38 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1) Lus10005164 [exp] 135 / 1e-36 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10016556 [exp] 132 / 1e-36 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1) Lus10040297 [exp] 129 / 3e-36 AT3G46540 191 / 9e-60 ENTH/VHS family protein (.1) Lus10011810 [exp] 99 / 7e-24 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10021173 [exp] 99 / 9e-24 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10023415 [exp] 76 / 2e-16 AT3G46540 123 / 3e-34 ENTH/VHS family protein (.1) Lus10001692 [exp] 61 / 3e-11 AT3G46540 57 / 8e-10 ENTH/VHS family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF01417 [poplar] [flax] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Potri.010G204100.2 pacid=42797589 polypeptide=Potri.010G204100.2.p locus=Potri.010G204100 ID=Potri.010G204100.2.v4.1 annot-version=v4.1 ATGGCGATGCTTCTAAACAAAAGCAGCAAGATGGGTAGCCCTCTTCTCCATGAATTCAAGAGGCAAGCTTCCTTCTTAAAAGAGAAAATCAAGACTGCTC GTTTGGCGCTAACTGATGTTACGCCAACAGAACTAACTATCACAAATGGAGATCTTTGGGCTCCGGATACACGTACCATGGGTGTTATTTCACGGGCTGC CTTCAAAGTTGATGATTACTGGAGAATTACTCTGCTTCTATTGGAACACCTGCTAATAACCCATGGACCTCTAAGAGTTGCTGAAGAGTTTCAGTGTGAT AAAGATGCCATTAAGGAGATGGTTAGCTTCCAGTTTGTCCATGAGAAAGGGTTCACTTGGGGATCGAGAGTTAGAAAACTATCTCAGAGAATACTGAAGC TACTTGAAAATGGACTATTTCTCCAACAAAAAAAAAAGGGGCAGGCGCTCGTAAGTTTCAGGGGTTTGGTAGCTTCTCCCAACGATCCTCTTCAGCCGAT GAAAGCCTTAAAGCATCAGACTTCAGGACATGAAGATGAGGAGTTCATGGACTCAAACGAGAAGCTTCTGTTCGAGGAAACAATCCAAATCCACGAGGAT ACCAGCCAGCCAGTACTGGGAAATCCAGTGAAGATTAGCAGGGAGGAATATACTGCAGAAGATCATCCATTCTGCGACAATCTTCATCATACCACAGTAT CCCTTCTTTCTGCCTCGGAGTGA
AA sequence Show only first row Show all	>Potri.010G204100.2 pacid=42797589 polypeptide=Potri.010G204100.2.p locus=Potri.010G204100 ID=Potri.010G204100.2.v4.1 annot-version=v4.1 MAMLLNKSSKMGSPLLHEFKRQASFLKEKIKTARLALTDVTPTELTITNGDLWAPDTRTMGVISRAAFKVDDYWRITLLLLEHLLITHGPLRVAEEFQCD KDAIKEMVSFQFVHEKGFTWGSRVRKLSQRILKLLENGLFLQQKKKGQALVSFRGLVASPNDPLQPMKALKHQTSGHEDEEFMDSNEKLLFEETIQIHED TSQPVLGNPVKISREEYTAEDHPFCDNLHHTTVSLLSASE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08670			ENTH/VHS family protein (.1)		Potri.010G204100 [exp]	0	1
AT4G16260			Glycosyl hydrolase superfamily...		Potri.010G143166 [exp]	7.81	0.7344
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Potri.006G022200 [exp]	8.00	0.8821	Pt-CYP709.2
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.010G111400 [exp]	10.67	0.8800
					Potri.001G459001 [exp]	11.31	0.8792
AT5G67060	bHLH	HEC1, bHLH088	HECATE 1, basic helix-loop-hel...		Potri.007G044600 [exp]	12.84	0.8727
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Potri.002G088200 [exp]	15.09	0.8688
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Potri.002G029400 [exp]	16.97	0.8442
AT2G37030			SAUR-like auxin-responsive pro...		Potri.008G037900 [exp]	22.22	0.8356	SAUR40
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Potri.010G042400 [exp]	22.44	0.8419	Pt-INO.2
AT1G04645			Plant self-incompatibility pro...		Potri.018G148366 [exp]	23.23	0.8385

Compare expression of checked genes

Potri.010G204100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.