Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55360 486 / 7e-175 ECR, CER10, ATTSC13, TSC13 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT5G16010 56 / 6e-09 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055400 [exp] 531 / 0 AT3G55360 513 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G013100 [exp] 63 / 4e-11 AT5G16010 298 / 4e-102 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245332 [exp] 61 / 1e-10 AT5G16010 289 / 1e-98 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245266 [exp] 61 / 2e-10 AT5G16010 291 / 2e-99 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012800 [exp] 51 / 4e-07 AT5G16010 266 / 3e-89 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.013G134433 [exp] 49 / 1e-06 AT2G38050 303 / 3e-104 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.016G110600 [exp] 49 / 2e-06 AT2G38050 350 / 1e-122 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245200 [exp] 47 / 4e-06 AT5G16010 295 / 9e-101 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.005G047800 [exp] 46 / 1e-05 AT2G38050 295 / 8e-101 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005162 [exp] 506 / 0 AT3G55360 541 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10001695 [exp] 505 / 0 AT3G55360 540 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10017183 [exp] 44 / 6e-05 AT2G38050 138 / 2e-64 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10021127 [exp] 41 / 0.0003 AT2G38050 256 / 3e-87 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [poplar] [flax] Steroid_dh PF02544 [poplar] [flax] Steroid_dh 3-oxo-5-alpha-steroid 4-dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.010G204400.1 pacid=42798093 polypeptide=Potri.010G204400.1.p locus=Potri.010G204400 ID=Potri.010G204400.1.v4.1 annot-version=v4.1 ATGAAGGTGACTGTAGTTTCTCGCAGTGGTAGAGAGGTCATTAAAGGGGGCCTTGAGCTCAGTGATTCGGCTACAGTGGCTGATCTGCAAGAGGCTATTC ATAAGCGAACCAAAAAATTCTACCCTTCAAGACAGCGGCTGACCCTACCTCTTCCACCGGGATCAAAGGAAAGGCCCGTTGTCCTTAGCTACAAGAAGAA CCTCAAAGAATACTGTGATGGGAATTTGGGCAACTTAACTGTTGTTTTCAAGGACCTGGGTCCGCAAGTTTCCTACCGCACACTCTTTTTCTGTGAATAC TTGGGTCCTTTGGTGCTCTATCCTGTTTTTTACTACTTCCCAGTCTACGAGTTTTTTGGCTACAAGGGGAAGCGAATCATCCACCCAGTTCAGACATATG CATTGTACTACTGGTGCTTCCACTATTTCAAACGCATCATGGAAACATTTTTTGTGCACCGATTTAGCCATGCAACCTCGCCACTCTCCAATGTGTTTCG AAATTGTGCTTATTATTGGACCTTTGGTTCCTTTATCGCATACTATGTGAACCATCCCCTTTACACCCCAGTTAGTGATCTTCAAATGAAGATTGGATTT GGATTTGGTTTGGTTTGTCAACTCGCAAACTTGTATTGCCATATGTTGCTGAGGAATCTTCGCCGTCCAGGTGGGAATGGTGGCTATCAAATTCCAAGTG GGTTTCTCTTCAATATTGTGACATGTGCAAATTACACAACAGAGATTTATCAGTGGTTAGGTTTCAACGTTGCAACACAGACTGTTTCAGGCTACTTTTT TCTTGTGGTTGCCACTTCCATCATGACCAACTGGGCCCTTGCAAAGCATCGGAGATTGAAGAAGCTATTTGATGGAAAGGACGGAAGACCCAGATATCCA CGCCGATGGGTTATACTGCCCCCATTCCTGTAG
AA sequence Show only first row Show all	>Potri.010G204400.1 pacid=42798093 polypeptide=Potri.010G204400.1.p locus=Potri.010G204400 ID=Potri.010G204400.1.v4.1 annot-version=v4.1 MKVTVVSRSGREVIKGGLELSDSATVADLQEAIHKRTKKFYPSRQRLTLPLPPGSKERPVVLSYKKNLKEYCDGNLGNLTVVFKDLGPQVSYRTLFFCEY LGPLVLYPVFYYFPVYEFFGYKGKRIIHPVQTYALYYWCFHYFKRIMETFFVHRFSHATSPLSNVFRNCAYYWTFGSFIAYYVNHPLYTPVSDLQMKIGF GFGLVCQLANLYCHMLLRNLRRPGGNGGYQIPSGFLFNIVTCANYTTEIYQWLGFNVATQTVSGYFFLVVATSIMTNWALAKHRRLKKLFDGKDGRPRYP RRWVILPPFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Potri.010G204400 [exp]	0	1
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Potri.014G074200 [exp]	6.16	0.9192
AT2G44050		COS1	coronatine insensitive1 suppre...		Potri.007G146000 [exp]	8.66	0.8902
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Potri.001G293400 [exp]	9.05	0.8991
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Potri.014G135100 [exp]	13.03	0.9340
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.016G053000 [exp]	15.16	0.8468
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.002G018300 [exp]	15.19	0.9103	CADL2
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Potri.007G091000 [exp]	23.66	0.9000
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G117100 [exp]	25.98	0.9120
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.019G001400 [exp]	28.56	0.9106
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.006G275900 [exp]	29.69	0.9134

Compare expression of checked genes

Potri.010G204400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.