Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39530 111 / 3e-31 Uncharacterised protein family (UPF0497) (.1) AT2G39518 107 / 8e-30 Uncharacterised protein family (UPF0497) (.1) AT2G38480 45 / 4e-06 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G040100 [exp] 61 / 5e-12 AT2G39518 79 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Potri.016G128200 [exp] 40 / 0.0003 AT2G38480 164 / 2e-51 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023416 [exp] 146 / 1e-44 AT2G39530 132 / 4e-39 Uncharacterised protein family (UPF0497) (.1) Lus10040298 [exp] 131 / 5e-39 AT2G39518 106 / 2e-29 Uncharacterised protein family (UPF0497) (.1) Lus10031303 [exp] 71 / 2e-15 AT2G39530 87 / 2e-21 Uncharacterised protein family (UPF0497) (.1) Lus10031304 [exp] 61 / 2e-11 AT2G39518 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031874 [exp] 56 / 1e-09 AT2G39530 92 / 1e-23 Uncharacterised protein family (UPF0497) (.1) Lus10031305 [exp] 55 / 2e-09 AT2G39530 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031875 [exp] 45 / 1e-05 AT2G39530 86 / 4e-21 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.010G204700.1 pacid=42797036 polypeptide=Potri.010G204700.1.p locus=Potri.010G204700 ID=Potri.010G204700.1.v4.1 annot-version=v4.1 ATGACCGCCCCCACAGCACCATCCATGGCTGCCCCCCCAGCACCATCCATGGTTTCTCGAATGACCGCTCTATTTTTGAGGGTCCTCACTTTTGCTTTCC TTATGGTATCACTTGTCATCATGACCACCAATACTGGCACCATTGAAATAGGCATCGACGAGTTTAAAGTCCGCTCCAAGGATTTTTATTCTTATCGATA CATGCTGGCGGCAATTGCGTTTGGATTAACGTACACAATTTTGCAAATTGCTCTCACTTTAAACCATATTTCCAAAAGGAACGGCGCCCAGACAAGTGGT GACGGCAACCTTGTGTTTGATTTCTATGGTGACAAGGTTGTATCATACATACTAGCCACGGGTGCTGCTGCGGCATTTGGAGCGACAAAAGAATTGAAGA CACAATTGGCAGGGCTAGGAGGTGATAAGTTTTTCAACAAAGGTTATGCATCCGCTAGTCTCCTCCTCCTCGGATTTGTATGCACAGCTATACTATCCGT TTTCTCATCATACGCACTCCCAAAGAAAGTTTAA
AA sequence Show only first row Show all	>Potri.010G204700.1 pacid=42797036 polypeptide=Potri.010G204700.1.p locus=Potri.010G204700 ID=Potri.010G204700.1.v4.1 annot-version=v4.1 MTAPTAPSMAAPPAPSMVSRMTALFLRVLTFAFLMVSLVIMTTNTGTIEIGIDEFKVRSKDFYSYRYMLAAIAFGLTYTILQIALTLNHISKRNGAQTSG DGNLVFDFYGDKVVSYILATGAAAAFGATKELKTQLAGLGGDKFFNKGYASASLLLLGFVCTAILSVFSSYALPKKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39530			Uncharacterised protein family...		Potri.010G204700 [exp]	0	1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G149300 [exp]	5.91	0.9068	CYP716.1
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Potri.001G099400 [exp]	6.78	0.8875	Pt-ACS2.3,ACS1
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Potri.016G066700 [exp]	6.92	0.8948	Pt-CDPK5.5,CPK19
					Potri.001G202800 [exp]	7.54	0.9234
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.004G185300 [exp]	7.74	0.8833	CYP94C6,CYP94.5
					Potri.001G203400 [exp]	14.21	0.9250
					Potri.017G145625 [exp]	14.42	0.8921
					Potri.001G203800 [exp]	14.49	0.8939
					Potri.001G203900 [exp]	15.49	0.8907
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Potri.002G155300 [exp]	19.18	0.9010	BAP2.1

Compare expression of checked genes

Potri.010G204700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.