Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55460 561 / 0 C2H2ZnF DNA/RNA-binding protein Kin17, conserved region (.1) AT5G51795 196 / 4e-59 DNA/RNA-binding protein Kin17, conserved region (.1) AT4G25020 50 / 1e-06 D111/G-patch domain-containing protein (.1) AT1G33520 47 / 2e-05 MOS2 modifier of snc1, 2, D111/G-patch domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055300 [exp] 669 / 0 AT1G55460 546 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1) Potri.003G104200 [exp] 53 / 2e-07 AT1G33520 339 / 2e-112 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) Potri.001G129700 [exp] 51 / 1e-06 AT1G33520 345 / 9e-115 modifier of snc1, 2, D111/G-patch domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005161 [exp] 600 / 0 AT1G55460 596 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10001697 [exp] 416 / 1e-145 AT1G55460 408 / 3e-142 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10012271 [exp] 155 / 7e-47 AT1G55460 152 / 4e-46 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10001696 [exp] 143 / 2e-42 AT1G55460 137 / 1e-40 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10004607 [exp] 55 / 7e-08 AT1G33520 396 / 8e-135 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) Lus10004541 [exp] 54 / 1e-07 AT1G33520 381 / 9e-129 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) Lus10039439 [exp] 45 / 2e-05 ND 45 / 1e-05 Lus10012272 [exp] 40 / 0.0002 AT1G55460 41 / 1e-05 DNA/RNA-binding protein Kin17, conserved region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF10357 [poplar] [flax] Kin17_mid Domain of Kin17 curved DNA-binding protein
Representative CDS sequence Show only first row Show all	>Potri.010G204900.1 pacid=42799700 polypeptide=Potri.010G204900.1.p locus=Potri.010G204900 ID=Potri.010G204900.1.v4.1 annot-version=v4.1 ATGGGTAAGAACGATTTCCTCACACCGAAAGCAATCGCGAATCGAATCAAAGCGAAAGGTCTTCAAAAACTCCGATGGTACTGTCAAATGTGTCAGAAAC AATGTCGAGACGAGAACGGATTCAAGTGCCACTGTATGAGCGAGAGCCACCAGCGGCAAATGCAAGTCTTCGGTCAAAACCCTAACAGGATCATCGACGG ATACTCTGAAGAATTCGAAAACGAATTCCTTGACATGATGAAACGGAGCCATAGGTTTTCTCGTGTCGCGGCGACCGTGGTTTATAATGAGTATATTCAT GATAGGCATCATATTCATATGAACTCGACGCAGTGGGCGACGTTGACGGAATTTGTCAAGTATCTGGGGAGAACTGGCAAGTGTAAAGTTGATGAAACGC CCAAAGGGTGGTTCATTACTTATATTGATAGGGATTCAGAGACGATTTTTAAGGAGAACATGAAGAATAAGAGAGTTAGAGCGGATTTAGCCGAGGAGGA GAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAAGGCTGGAGAGTTGTCTGTTAACAATGACGGTGTGGAGAGTGGTGATGTGGATAATGGTGAAGTG CGGCCAGCAAAGGAGTTGAAATTGGACAGTGGTGTGAAGGTTGGTTTCGCGCTTGGTTTGAAGAGTAATAATGTTGGGAAAGATAGAGGGGAGAGTTCTA GTTCTAGACTGGTTTTTGAGGAAGTTGAGGATAAGGAGAGGAAGATGGGGAGAAGTAAGGAAAGTAGCAATGGAGGTAAAAGTGGGAAATCAGCATTGGA GGAGTTGATGAAAGAGGAAGAGAAGGCGAAGGAAAGGAGTAACAGGAAGGATTATTGGTTGTTCGAAGGGATTATTGTTAAGGTAATGAGTAAGGCTTTG GCAGAGAAAGGGTATTATAAGCAGAAAGGGGTAGTGAGGAAAGTGATTGATAAGTATGTTGCTGAAATTGAGATGCTTGAGAGTAAGCATAAGTTGAGGG TCGATCAGGAAGAGCTCGAGACTGTGATCCCGCAGATTGGGGGTTTAGTGAAAATAGTGAATGGGGCGTATAGAGGTTCCAATGCCAGGTTGTTGGGAGT GGATACAGAGAAGTTTTGTGCCAAGGTGCAGATAGAGAAGGGAATTTATGATGGGAGAGTGCTTAAGGCTGTTGAATATGAGGATATTTGCAAACTTGCG TAG
AA sequence Show only first row Show all	>Potri.010G204900.1 pacid=42799700 polypeptide=Potri.010G204900.1.p locus=Potri.010G204900 ID=Potri.010G204900.1.v4.1 annot-version=v4.1 MGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQVFGQNPNRIIDGYSEEFENEFLDMMKRSHRFSRVAATVVYNEYIH DRHHIHMNSTQWATLTEFVKYLGRTGKCKVDETPKGWFITYIDRDSETIFKENMKNKRVRADLAEEEKQEREIKKQIEKAGELSVNNDGVESGDVDNGEV RPAKELKLDSGVKVGFALGLKSNNVGKDRGESSSSRLVFEEVEDKERKMGRSKESSNGGKSGKSALEELMKEEEKAKERSNRKDYWLFEGIIVKVMSKAL AEKGYYKQKGVVRKVIDKYVAEIEMLESKHKLRVDQEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTEKFCAKVQIEKGIYDGRVLKAVEYEDICKLA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.010G204900 [exp]	0	1
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Potri.002G060200 [exp]	5.65	0.8640
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.015G130900 [exp]	7.74	0.8068
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Potri.004G168400 [exp]	9.79	0.7764
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Potri.001G209100 [exp]	13.41	0.7905
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.003G223000 [exp]	17.66	0.8069
					Potri.001G306100 [exp]	18.00	0.8022
AT3G24080			KRR1 family protein (.1.2)		Potri.001G125200 [exp]	20.83	0.7938
AT5G43490			unknown protein		Potri.017G058600 [exp]	22.24	0.8230
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Potri.005G201400 [exp]	22.36	0.7673
					Potri.013G055800 [exp]	22.84	0.6833

Compare expression of checked genes

Potri.010G204900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.