Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16050 149 / 2e-44 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37820 53 / 5e-08 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37800 50 / 4e-07 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44380 45 / 1e-05 Cysteine/Histidine-rich C1 domain family protein (.1) AT1G20990 45 / 1e-05 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G28650 44 / 8e-05 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G54030 43 / 0.0001 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44370 42 / 0.0002 Cysteine/Histidine-rich C1 domain family protein (.1) AT4G11550 42 / 0.0004 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G19660 41 / 0.0005 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G204600 [exp] 456 / 6e-165 AT2G16050 151 / 7e-45 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.010G205200 [exp] 441 / 7e-159 AT2G16050 159 / 3e-48 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.008G055200 [exp] 367 / 1e-129 AT2G16050 147 / 2e-43 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.004G149500 [exp] 167 / 4e-51 AT2G16050 339 / 3e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.009G110500 [exp] 151 / 4e-45 AT2G16050 338 / 6e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.004G209200 [exp] 145 / 1e-42 AT2G16050 278 / 1e-94 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.009G170201 [exp] 84 / 2e-19 AT2G16050 165 / 3e-51 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.005G258800 [exp] 50 / 3e-07 AT1G20990 270 / 1e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044200 [exp] 50 / 6e-07 AT5G22355 203 / 3e-56 Cysteine/Histidine-rich C1 domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017477 [exp] 132 / 2e-37 AT2G16050 340 / 4e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10028723 [exp] 49 / 2e-06 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G205100.1 pacid=42799497 polypeptide=Potri.010G205100.1.p locus=Potri.010G205100 ID=Potri.010G205100.1.v4.1 annot-version=v4.1 ATGGGATTAACCAAGATTAAACATTCCAGTCATAGCGAACATTTTCTGTTGTTGAAGTATCCACGAGAGCCTTATGAATGTAACGGATGCAAAGGACTGG GGCTCGGCCCATGCTATGAATGCGAGCACGAAGACTGCAGCTTCTATCTTCACGAGGAATGCGCAAAGGCTTCTCCATCTGCCTTCCATTCATTTTCGAA GTGCAGCTTGAGATTTCACTCCAGAGCCCCGCAAGAGGATGAAAGATTCTGTGATGCTTGTGGACAAGATGTATTAGGGTTCGTGTACCAGTGCAAACAT AAGAAGCCACACGATTACCATCCCAGCTGTTTAAAGCTCCAGCGTAGCTTAACAGCTGATGATGGCACGAGGTTACACCTGAGGGAGAAGCTGCCATCGA AATGCTTAAACTGTGGAAGTAGGAAAACTTGGAACGGAATCAAAGGGTGGTCCTATGTTTCTTCCTGTGGTCAATATTGTTACCATGTAGCTTGTGTGAA GGACATGATCTTGAAGAAGTGGAAGAAGGGTTATTTCCTTCAAGATGGAAACGTGAATGAGACGGATAATTACCTAGCACTTCAAAGTGCCATCCCAAGT AGAGAACTAGAACTCTCAAGTGGGAAAAGTTCAAGCAAGGCCAGGAATATATGGAGAAAGGCAAAGAAAGCTATCATGCTTATTATTTCTGCTTTGTTTG GAGATCCCACGACTCTGATTTCATTGCTTGTTCAACAGTTGCTCTCCGATTAA
AA sequence Show only first row Show all	>Potri.010G205100.1 pacid=42799497 polypeptide=Potri.010G205100.1.p locus=Potri.010G205100 ID=Potri.010G205100.1.v4.1 annot-version=v4.1 MGLTKIKHSSHSEHFLLLKYPREPYECNGCKGLGLGPCYECEHEDCSFYLHEECAKASPSAFHSFSKCSLRFHSRAPQEDERFCDACGQDVLGFVYQCKH KKPHDYHPSCLKLQRSLTADDGTRLHLREKLPSKCLNCGSRKTWNGIKGWSYVSSCGQYCYHVACVKDMILKKWKKGYFLQDGNVNETDNYLALQSAIPS RELELSSGKSSSKARNIWRKAKKAIMLIISALFGDPTTLISLLVQQLLSD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.010G205100 [exp]	0	1
AT1G76520			Auxin efflux carrier family pr...		Potri.001G125501 [exp]	5.47	0.7652
AT5G02420			unknown protein		Potri.006G084700 [exp]	10.00	0.7466
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080400 [exp]	15.49	0.7281
AT1G72830	CCAAT	NF-YA3, ATHAP2C...	"nuclear factor Y, subunit A3"...		Potri.006G145100 [exp]	18.70	0.7550	HAP2.6
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Potri.001G074100 [exp]	28.00	0.6968
AT1G72830	CCAAT	NF-YA3, ATHAP2C...	"nuclear factor Y, subunit A3"...		Potri.018G064700 [exp]	30.49	0.7172
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.008G135800 [exp]	36.98	0.6855
AT4G04220		AtRLP46	receptor like protein 46 (.1)		Potri.001G003200 [exp]	37.78	0.6941
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Potri.005G102600 [exp]	53.31	0.6768
AT1G22540			Major facilitator superfamily ...		Potri.019G079700 [exp]	55.27	0.6654

Compare expression of checked genes

Potri.010G205100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.