Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59350 111 / 1e-28 unknown protein AT2G39560 85 / 4e-19 Putative membrane lipoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G054400 [exp] 445 / 1e-158 AT5G59350 91 / 8e-21 unknown protein Potri.009G029300 [exp] 226 / 3e-72 AT5G59350 161 / 1e-47 unknown protein Potri.001G238300 [exp] 217 / 8e-69 AT5G59350 146 / 1e-41 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040302 [exp] 196 / 4e-61 AT5G59350 117 / 3e-31 unknown protein Lus10023421 [exp] 195 / 8e-61 AT5G59350 115 / 2e-30 unknown protein Lus10005456 [exp] 113 / 2e-30 AT5G59350 92 / 7e-23 unknown protein Lus10016568 [exp] 110 / 6e-28 AT5G59350 166 / 1e-49 unknown protein Lus10040839 [exp] 99 / 1e-23 AT5G59350 160 / 2e-47 unknown protein Lus10004955 [exp] 75 / 7e-16 AT5G59350 147 / 2e-44 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G206100.2 pacid=42798495 polypeptide=Potri.010G206100.2.p locus=Potri.010G206100 ID=Potri.010G206100.2.v4.1 annot-version=v4.1 ATGAAATCTTTGAGTAGTGTAGGGCTTGGTTTGAGTATAGTTTTTGGTTGCCTTTTGTTGGCTCTTGTTGCTGAGCTCTACTATTTGTTATGGTGGAAGA GAAGGTTTGCTAACAAAGAGATAGGAGATGATTACAGCAGCCCGGCAAGAGAGCTTTTTTTTATGTTCTGTTTGAGAAAGCCGTCTTCTTTAAGGAACAA TCAAGAACTATGTTCTTCAGTGAGAATCACAGATACACTTGTGCATCATGATCAAGAATCTCAGCTCAATATTAATACAAGCAAAGATTTGTTGCTCAGG CCCTTCAGTGATGATAACGTGGAGACAGAGCTCATGAGGCTGCATAGTCTCTCAGGTCCACCAAGATTTCTTTTTACAATTGTTGAAGAAACAAAGGAGG ATTTAGAGTCTGAAGATGGCAGGTCTAGAGGTGATAACAAGAGTGCAAAAGAATCAAGAAGTAGAAGCTTGAGTGATTTGCTTCTTACTGTGGAGACTCC ATATCTAACCCCTCTTGCTTCTCCACCATTTTTCACGCCTCCTCTTACTCCTAACTATAACCAGATTGGATTCAACCATCTCTTTGAATCATCAAAAGAT GCAGAGTTCAACAAGATACGGTCATCACCTCCTCCAAAATTCAAGTTCTTACAGGATGCGGAGGAGAAACTATATGCAAGGAGATTGATGCAAGAAGCTG AGGAGATGGTCCCAAGGAAAGATTGTTTTGCTCAAGATTACACCAAAAGACCTACTAGTTCAAATTTTCTAAAAGACGAGGATGATGGGCCTTTTATCAC CATCATTGTTGACAGGAACAAAGAAAGAGAGTTTAATGAACAAAATCACCAGCTAGCACACCACCCTTCAAGCAGTTCACAGGTACTTCCTCTTGTTGCT TCGCCTTCAACATCAAAACCAGCAGCTAAGAAAAGTTCCTTCTTTCATTAG
AA sequence Show only first row Show all	>Potri.010G206100.2 pacid=42798495 polypeptide=Potri.010G206100.2.p locus=Potri.010G206100 ID=Potri.010G206100.2.v4.1 annot-version=v4.1 MKSLSSVGLGLSIVFGCLLLALVAELYYLLWWKRRFANKEIGDDYSSPARELFFMFCLRKPSSLRNNQELCSSVRITDTLVHHDQESQLNINTSKDLLLR PFSDDNVETELMRLHSLSGPPRFLFTIVEETKEDLESEDGRSRGDNKSAKESRSRSLSDLLLTVETPYLTPLASPPFFTPPLTPNYNQIGFNHLFESSKD AEFNKIRSSPPPKFKFLQDAEEKLYARRLMQEAEEMVPRKDCFAQDYTKRPTSSNFLKDEDDGPFITIIVDRNKEREFNEQNHQLAHHPSSSSQVLPLVA SPSTSKPAAKKSSFFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59350			unknown protein		Potri.010G206100 [exp]	0	1
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.001G273700 [exp]	1.00	0.8926
AT3G61920			unknown protein		Potri.002G178900 [exp]	7.34	0.8256
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G073925 [exp]	7.48	0.8724
AT1G23890			NHL domain-containing protein ...		Potri.017G129500 [exp]	7.61	0.8255
AT3G23805		RALFL24	ralf-like 24 (.1)		Potri.001G320700 [exp]	9.79	0.8239
AT2G23360			Plant protein of unknown funct...		Potri.001G304200 [exp]	10.81	0.8738
AT5G06470			Glutaredoxin family protein (....		Potri.006G201300 [exp]	11.22	0.8747
AT2G30700			unknown protein		Potri.017G018000 [exp]	11.22	0.7750
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Potri.004G079100 [exp]	12.36	0.8104
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Potri.016G133800 [exp]	13.41	0.8144

Compare expression of checked genes

Potri.010G206100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.