Plant FIBer expression Database

Potri.010G206400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12570 716 / 0 FYD FYD (.1.2.3.4)
AT2G37570 669 / 0 SLT1 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2)
AT5G02480 588 / 0 HSP20-like chaperones superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G054100
[exp]
919 / 0 AT3G12570 721 / 0.0 FYD (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023420
[exp]
783 / 0 AT3G12570 730 / 0.0 FYD (.1.2.3.4)
Lus10040301
[exp]
765 / 0 AT3G12570 731 / 0.0 FYD (.1.2.3.4)
Lus10025337
[exp]
640 / 0 AT2G37570 789 / 0.0 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2)
Lus10024406
[exp]
639 / 0 AT2G37570 786 / 0.0 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.010G206400.3 pacid=42798856 polypeptide=Potri.010G206400.3.p locus=Potri.010G206400 ID=Potri.010G206400.3.v4.1 annot-version=v4.1
ATGGGGGAAGCTCTTCTAACGACTTTATCGATGGAAAATTACCACCCATCTACACTTCTTTCGATGGATTCAGGTTCTCTTGCACATGATGAGTTGGAGA
GGGAGATGAACCGGTCAATCATTCTTTCACGGCCTCCTGATATCAATCTCCCATTGTCATCTGAGCCTAGTCCACCTCCTCCCCTTACTTGGAACGATCC
GTGTGACATCCTGGATGTAGGTCTTGGGCCTCAGATCTATGAGACTGAGACAATTGTCACTATTCCAAAAATTGCGAAGAAATGTGCAAAACGCCTGGAT
AGCATTTGGGGTGCCTGGTTCTTCTTTAGCTTCTATTTCAAGCCTGTTTTGAATGAGAAGTCGAAATCCAAAATAAATAGGGATAGTAAGGGTGTTTCTG
GGTTTGAGAAATCTGATTTGCAGCTTGATGCTTTTTTGGTTCAGCATGACATGGAGAACATGTACATGTGGGTGTTCAAGGAAAGGCCTGAAAATGCCCT
GGGTAAAATGCAACTGAGGAGCTACATGAATGGGCATTCTCGCCAAGGGGAGCCCCCATTTCCATTCAGTGTTGACAGGGGCTTTGTCCGGTCTCATAGG
ATGCAGAGGAAGCATTACAGGGGTCTCTCCAATCCTCAGTGCGTTCATGGTATTGAAGTTGTTCGATCACCTAATCTCGTTAATCTTGATGATGAAGAGC
GGAAGAGGTGGGTGGAGCTTACAGGCCGAGACATCAATTTCTCCGTTCCTTCTGAGGCAAGTGATTTTGGTTCATGGAGGAACCTTCCAAGCACAGAATT
TGAGCTTGAGCGCACCCCTGCTGCACTAAAGAGTAATGGAAATGCCCACCCAAGAAAGTTGCTTAATGGTACGGGTCTGAATCTGTCTACCCAGTCCTCG
GACCACAGCAATGGTGAAGGCCTTGACTTGTCTCCTATTAGCAACAAGCGGAAGCATTGCAATGATGATGAATTTTTGCATTCTGTTGATATGAATACCC
ATCCGGTTGAGCCAACGTGGTTAAACGAGTTCAGTGGGGTAATGAAGAATGTAAATGGGCCTGTTACAGCAGCGAAAACAATATATGAGGATGATAAAGC
CTTTTTAGTCATTGTCAGCTTGCCCTTTGCAGATCTTCAAAGGGTCAAAGTTACTTGGAGGAATACTAAATTGCACGGTATTGTTAAGATATCTTGTACA
AGTACAGCTTGCATGCCATTTATTAAGCGGCATGATAGGACATTTAAGCTAACAGATCCAACACCAGAGCACTGCCCTCCAGGGGAATTCATTAGGGAAA
TTCCCCTCCCAAACCTGATTCCCGAAGATGCAAAGCTGGAAGCATACCGCGATGAGACAGGAACAGTGCTTGAAATTATTGTGCCCAAGCATCGTGTAGG
ACCAGAAGAACATGAAGTTCGTGTATGCCTCCGGCCCCCTCCTTGGAGTGAATGA
AA sequence
>Potri.010G206400.3 pacid=42798856 polypeptide=Potri.010G206400.3.p locus=Potri.010G206400 ID=Potri.010G206400.3.v4.1 annot-version=v4.1
MGEALLTTLSMENYHPSTLLSMDSGSLAHDELEREMNRSIILSRPPDINLPLSSEPSPPPPLTWNDPCDILDVGLGPQIYETETIVTIPKIAKKCAKRLD
SIWGAWFFFSFYFKPVLNEKSKSKINRDSKGVSGFEKSDLQLDAFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGEPPFPFSVDRGFVRSHR
MQRKHYRGLSNPQCVHGIEVVRSPNLVNLDDEERKRWVELTGRDINFSVPSEASDFGSWRNLPSTEFELERTPAALKSNGNAHPRKLLNGTGLNLSTQSS
DHSNGEGLDLSPISNKRKHCNDDEFLHSVDMNTHPVEPTWLNEFSGVMKNVNGPVTAAKTIYEDDKAFLVIVSLPFADLQRVKVTWRNTKLHGIVKISCT
STACMPFIKRHDRTFKLTDPTPEHCPPGEFIREIPLPNLIPEDAKLEAYRDETGTVLEIIVPKHRVGPEEHEVRVCLRPPPWSE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G12570 FYD FYD (.1.2.3.4) Potri.010G206400
[exp]
0 1
AT3G12570 FYD FYD (.1.2.3.4) Potri.008G054100
[exp]
4.00 0.8230
AT3G51580 unknown protein Potri.019G058400
[exp]
6.55 0.8377
AT1G14560 Mitochondrial substrate carrie... Potri.006G226300
[exp]
8.12 0.8240
AT4G28400 Protein phosphatase 2C family ... Potri.006G081400
[exp]
11.13 0.8302
AT4G12010 Disease resistance protein (TI... Potri.017G105201
[exp]
11.22 0.7951
AT5G04550 Protein of unknown function (D... Potri.008G026800
[exp]
11.22 0.8128
AT4G00300 fringe-related protein (.1.2) Potri.014G088100
[exp]
12.68 0.7780
AT3G22890 APS1 ATP sulfurylase 1 (.1) Potri.008G159000
[exp]
18.00 0.7734 APS1.2
AT2G38610 RNA-binding KH domain-containi... Potri.013G159800
[exp]
19.79 0.8206
AT4G36550 ARM repeat superfamily protein... Potri.005G122100
[exp]
20.97 0.7617

Potri.010G206400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.