Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12580 1181 / 0 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02500 1173 / 0 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G02490 1155 / 0 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 1152 / 0 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G16030 1087 / 0 HSP70B heat shock protein 70B (.1) AT1G56410 1071 / 0 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 780 / 0 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 779 / 0 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 746 / 0 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G09590 516 / 5e-176 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G054000 [exp] 1241 / 0 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 1212 / 0 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 1194 / 0 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 1191 / 0 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G042600 [exp] 1133 / 0 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 1093 / 0 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.003G184000 [exp] 1030 / 0 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054700 [exp] 979 / 0 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054900 [exp] 908 / 0 AT3G12580 947 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025333 [exp] 1198 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025276 [exp] 1189 / 0 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10024407 [exp] 1188 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10005953 [exp] 1158 / 0 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10002319 [exp] 1117 / 0 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10023418 [exp] 996 / 0 AT5G02500 1033 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023423 [exp] 956 / 0 AT3G12580 1000 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10025336 [exp] 905 / 0 AT5G02500 953 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10029455 [exp] 876 / 0 AT5G02500 932 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023043 [exp] 784 / 0 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00012 [poplar] [flax] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Potri.010G206600.1 pacid=42797868 polypeptide=Potri.010G206600.1.p locus=Potri.010G206600 ID=Potri.010G206600.1.v4.1 annot-version=v4.1 ATGGCAGGAAAAGGAGAAGGGCCAGCGATCGGTATCGATCTAGGCACAACATACTCATGCGTCGGCGTATGGCAACATGACAGAGTTGAAATCATAGCTA ATGATCAAGGCAACAGAACGACACCGTCTTATGTTGCTTTCACTGATACAGAGCGTTTGATTGGCGATGCTGCTAAAAACCAGGTCGCCATGAACCCCAT CAACACCGTCTTTGATGCAAAGCGTTTGATTGGTAGGAGATTCAGCGATCCTTCAGTTCAGAGTGATATCAAGCTCTGGCCATTCAAGGTCGTTGCTGGT CCTGGTGACAAGCCTATGATTGTGGTTACCTACAAGGGCGAGGAGAAACAATTTTCTGCCGAGGAGATTTCTTCAATGGTTCTCATTAAAATGCGTGAGA TTGCTGAAGCTTTCCTTGGCACCTCTGTCAATAATGCGGTAGTTACTGTCCCTGCTTACTTCAATGACTCTCAAAGGCAGGCCACGAAGGATGCTGGTGT CATTGCCGGTCTAAATGTCATGCGTATTATCAACGAACCCACTGCCGCTGCTATCGCTTATGGTCTTGACAAGAAGGCAACGAGTGTTGGCGAGAAGAAT GTTCTCATCTTTGATTTGGGTGGTGGTACTTTTGATGTCTCTCTTCTTACCATTGAAGAGGGTATCTTTGAGGTGAAGGCCACTGCTGGAGATACCCACC TTGGAGGTGAGGACTTCGACAACAGAATGGTGAATCACTTTGTTCAGGAGTTTAAGAGGAAACATAAGAAGGATATTAGTGGAAGTCCCAGAGCTCTTAG GAGGTTGAGAACTGCCTGTGAGAGGGCAAAAAGGACTCTGTCATCCACTGCTCAGACCACCATTGAGATTGACTCTCTGTATGAGGGTATTGACTTTTAT TCAACCATCACTCGTGCAAGATTTGAGGAGATGAACATGGATCTCTTCAGGAAGTGCATGGAGCCTGTAGAGAAGTGTTTGAGGGATGCTAAGATGGACA AGAGCACTGTCCATGACGTTGTCCTTGTTGGTGGTTCTACTAGAATCCCCAAGGTGCAGCAGCTGTTGCAGGACTTTTTCAATGGGAAGGAGCTTTGCAA GAGCATTAACCCTGATGAGGCTGTTGCTTATGGTGCTGCTGTCCAGGCTGCAATCTTGAGTGGTGAGGGCAATGAGAGGGTACAAGATTTGCTACTTTTG GATGTCACTCCTCTTTCTCTGGGATTGGAAACAGCTGGAGGTGTCATGACTGTTTTAATTCCAAGAAACACCACCATCCCCACAAAGAAGGAGCAGGTGT TCTCCACCTATTCAGACAACCAACCTGGTGTCTTGATCCAAGTTTTTGAGGGTGAGAGAGCAAGAACAAAGGACAATAATTTACTGGGAAAATTTGAGCT ATCTGGCATTCCTCCAGCACCAAGGGGTGTTCCTCAAATCACTGTGTGCTTTGATATTGATGCCAATGGTATATTGAACGTCTCTGCTGAGGACAAGACT ACTGGCCAGAAGAACAAGATCACAATCACTAATGATAAGGGAAGGCTGTCAAAGGAGGAGATTGAGAAAATGGTACAGGAAGCTGAGAAGTACAAGTCTG AGGACGAGGAACACAAGAAGAAGGTTGAAGCTAAAAATGCCTTGGAAAATTATGCCTATAACATGAGAAACACCGTGAAGGATGAGAAGATTGGATCCCA ACTTAGCCCAGCTGATAAGAAGAAAATCGAGGATGCAATTGATCAGGCCATTCAGTGGTTGGACAGCAACCAGCTTGCGGAGGTTGATGAATTCGAGGAC AAGATGAAAGAGCTGGAGAGCATTTGCAATCCTATAATTGCCAAGATGTATCAAGGCGCTGGTCCTGACATGGGTGGCAGCATGGATGAAGATATTCCAT CGACTGGCGGCAGTGGTGCTGGCCCTAAGATTGAAGAAGTCGATTGA
AA sequence Show only first row Show all	>Potri.010G206600.1 pacid=42797868 polypeptide=Potri.010G206600.1.p locus=Potri.010G206600 ID=Potri.010G206600.1.v4.1 annot-version=v4.1 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDPSVQSDIKLWPFKVVAG PGDKPMIVVTYKGEEKQFSAEEISSMVLIKMREIAEAFLGTSVNNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKN VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGSPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFY STITRARFEEMNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNERVQDLLLL DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKT TGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSQLSPADKKKIEDAIDQAIQWLDSNQLAEVDEFED KMKELESICNPIIAKMYQGAGPDMGGSMDEDIPSTGGSGAGPKIEEVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.010G206600 [exp]	0	1
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Potri.017G146600 [exp]	3.74	0.9548
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.005G214800 [exp]	7.21	0.9004
AT5G48570		ROF2, ATFKBP65	FKBP-type peptidyl-prolyl cis-...		Potri.014G149400 [exp]	9.38	0.9383
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Potri.002G212600 [exp]	9.84	0.8352	MBD911
AT3G09350		Fes1A	Fes1A (.1.2.3)		Potri.006G088000 [exp]	13.07	0.9328
AT4G02890		UBQ14	Ubiquitin family protein (.1.2...		Potri.017G135600 [exp]	13.85	0.9292	Pt-SUBI.8
AT4G15420			Ubiquitin fusion degradation U...		Potri.014G156300 [exp]	14.38	0.9167
AT5G35320			unknown protein		Potri.006G070900 [exp]	14.89	0.9221
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G109200 [exp]	16.27	0.9272	HSP23.1
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Potri.001G182100 [exp]	20.14	0.9199	Pt-A37.1

Compare expression of checked genes

Potri.010G206600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.