Plant FIBer expression Database

Potri.010G206900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G27490 350 / 1e-123 ATCOAE dephospho-CoA kinase family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G053601
[exp]
253 / 3e-86 AT2G27490 219 / 3e-73 dephospho-CoA kinase family (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013897
[exp]
388 / 1e-138 AT2G27490 323 / 4e-113 dephospho-CoA kinase family (.1.2)
Lus10002109
[exp]
387 / 2e-136 AT2G27490 326 / 6e-112 dephospho-CoA kinase family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF01121 CoaE Dephospho-CoA kinase
Representative CDS sequence
>Potri.010G206900.2 pacid=42800139 polypeptide=Potri.010G206900.2.p locus=Potri.010G206900 ID=Potri.010G206900.2.v4.1 annot-version=v4.1
ATGAGGATAGTGGGATTGACAGGTGGAATCTCGTCGGGAAAGAGTACTGTCTCAAATCTTTTCAAGTCCCATGACATTCCTGTCGTTGACGCTGATATAG
TTGCTAGGGATGTACTGAAGAAAGGTGCCGGTGGATATAAGAGGGTAGTTGCAGCGTTTGGAGAGGACATATTGCAAGCTAACGGGGAAGTTGATAGGCC
AAAACTGGGCCAGATTGTGTTCTCTGACCCTGGGAAGCGCCAGCTTCTCAATAGGCTTTTGGCTCCTTTTATATCCTCTGGCATCTTTTGGGAAATTTTA
AAGTTGTGGTTGAAGGGTTGTAAGGTAATTGTCCTAGACATTCCTTTGTTGTTTGAAGCCAAGATGGATAAGTGGACAAAACCCATTATTGTTGTTTGGG
TTGACACTGAAACACAGCTTCAGCGACTCATGGCAAGAGATAGAATCAATGAGGAAGATGCCAGAAACAGAACGAACGCTCAGATGGCCCTGGATTTGAA
AAGGTCCAAGGCTGACATTGTCATTGATAACTCTGGCACCATAGAAGACCTGGAGGAACAGTTTCAGAAGGTATTAGTCCAGGTTACAGAGCCTTTGACG
TGGACTGAATTCTGGCTTTCAAGACAGGGAGCCTTCTCGGCTCTTGCGTCCATTATTATCGGAGTTGTTGTTGGCAAAAAATGTTCTTAG
AA sequence
>Potri.010G206900.2 pacid=42800139 polypeptide=Potri.010G206900.2.p locus=Potri.010G206900 ID=Potri.010G206900.2.v4.1 annot-version=v4.1
MRIVGLTGGISSGKSTVSNLFKSHDIPVVDADIVARDVLKKGAGGYKRVVAAFGEDILQANGEVDRPKLGQIVFSDPGKRQLLNRLLAPFISSGIFWEIL
KLWLKGCKVIVLDIPLLFEAKMDKWTKPIIVVWVDTETQLQRLMARDRINEEDARNRTNAQMALDLKRSKADIVIDNSGTIEDLEEQFQKVLVQVTEPLT
WTEFWLSRQGAFSALASIIIGVVVGKKCS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G27490 ATCOAE dephospho-CoA kinase family (.... Potri.010G206900
[exp]
0 1
AT5G53860 EMB64, EMB2737 EMBRYO DEFECTIVE 64, embryo de... Potri.011G118000
[exp]
5.29 0.8226
AT5G54180 PTAC15 plastid transcriptionally acti... Potri.015G005200
[exp]
7.28 0.8323
AT5G14590 Isocitrate/isopropylmalate deh... Potri.001G347800
[exp]
8.30 0.8239
AT1G49170 Protein of unknown function (D... Potri.005G056500
[exp]
10.53 0.7297
AT3G58180 ARM repeat superfamily protein... Potri.002G041400
[exp]
11.22 0.7909
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.013G032600
[exp]
13.78 0.8159
AT3G15460 Ribosomal RNA processing Brix ... Potri.001G403100
[exp]
16.43 0.7533
AT1G77550 tubulin-tyrosine ligases;tubul... Potri.006G141900
[exp]
17.49 0.7877
AT5G65880 unknown protein Potri.007G006700
[exp]
17.66 0.8000
AT5G64830 programmed cell death 2 C-term... Potri.007G080500
[exp]
20.49 0.7617

Potri.010G206900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.