Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55390 243 / 8e-83 Uncharacterised protein family (UPF0497) (.1) AT1G17200 62 / 6e-12 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT1G79780 56 / 1e-09 Uncharacterised protein family (UPF0497) (.1) AT2G38480 51 / 5e-08 Uncharacterised protein family (UPF0497) (.1) AT2G36330 51 / 1e-07 Uncharacterised protein family (UPF0497) (.1) AT5G40300 47 / 1e-06 Uncharacterised protein family (UPF0497) (.1) AT4G11655 45 / 6e-06 Uncharacterised protein family (UPF0497) (.1) AT3G16300 45 / 8e-06 Uncharacterised protein family (UPF0497) (.1) AT5G62820 42 / 7e-05 Uncharacterised protein family (UPF0497) (.1) AT1G03700 42 / 7e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G053500 [exp] 352 / 5e-126 AT3G55390 238 / 6e-81 Uncharacterised protein family (UPF0497) (.1) Potri.016G128200 [exp] 59 / 9e-11 AT2G38480 164 / 2e-51 Uncharacterised protein family (UPF0497) (.1) Potri.011G140200 [exp] 57 / 3e-10 AT1G17200 223 / 3e-74 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.001G436400 [exp] 57 / 5e-10 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.003G050400 [exp] 56 / 1e-09 AT3G16300 137 / 2e-40 Uncharacterised protein family (UPF0497) (.1) Potri.001G102600 [exp] 55 / 3e-09 AT4G11655 105 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.012G079800 [exp] 44 / 3e-05 AT2G36330 218 / 3e-70 Uncharacterised protein family (UPF0497) (.1) Potri.001G188000 [exp] 43 / 3e-05 AT3G16300 131 / 5e-38 Uncharacterised protein family (UPF0497) (.1) Potri.016G008800 [exp] 39 / 0.0008 AT2G35760 253 / 2e-86 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005154 [exp] 259 / 9e-89 AT3G55390 233 / 2e-78 Uncharacterised protein family (UPF0497) (.1) Lus10001709 [exp] 247 / 3e-84 AT3G55390 231 / 1e-77 Uncharacterised protein family (UPF0497) (.1) Lus10026196 [exp] 59 / 7e-11 AT1G17200 241 / 1e-81 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10042471 [exp] 58 / 2e-10 AT1G17200 242 / 6e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10012216 [exp] 52 / 3e-08 AT2G38480 170 / 2e-53 Uncharacterised protein family (UPF0497) (.1) Lus10001266 [exp] 50 / 1e-07 AT2G38480 168 / 8e-53 Uncharacterised protein family (UPF0497) (.1) Lus10031303 [exp] 47 / 1e-06 AT2G39530 87 / 2e-21 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.010G207000.1 pacid=42797258 polypeptide=Potri.010G207000.1.p locus=Potri.010G207000 ID=Potri.010G207000.1.v4.1 annot-version=v4.1 ATGCGGTCTCCACAGCCCCACCGTAGCGGCGGTGACACCCAACAACACTTCCAATCCACCGTGTCAGTACAGAAGCTGAAACGATTCAACTCACTCATTC TTGTTTTTCGATTCGCTGCCTTTTGCTTCTCGCTTGCCTCTGCTGTTTTCATGCTCACAAACTCTAGAGGATCTGATTCCCTTCATTGGTACAATTTTGA CGCATTCAGATACGTTTTCGCTGCGAATGCGATCGTCGCCATATACTCTCTATTCGAGATGGCTGCTTCCGTCTGGGAAATCTCAAGAAATGCCACGCTC TTCCCTGAAATCTGCCAAGTCTGGTTCGATTTCGGCCACGACCAGGTGTTTGCGTACCTGCTATTGTCAGCTAACACCGCGGGTACGGAGCTGGCGAGGA CACTGAAGGACACGTGTACGGATAATAAAGCGTTCTGTGTGCAATCTGATATAGCGATTGTTTTGGGTTTCGCCGGGTTTTTGTTCTTGGGCATCTCGTC CCTGTTTTCGGGTTTTCGGGTGGTTTGTTTTATAATCAACGGCTCTCGTTTTTATGTTTAG
AA sequence Show only first row Show all	>Potri.010G207000.1 pacid=42797258 polypeptide=Potri.010G207000.1.p locus=Potri.010G207000 ID=Potri.010G207000.1.v4.1 annot-version=v4.1 MRSPQPHRSGGDTQQHFQSTVSVQKLKRFNSLILVFRFAAFCFSLASAVFMLTNSRGSDSLHWYNFDAFRYVFAANAIVAIYSLFEMAASVWEISRNATL FPEICQVWFDFGHDQVFAYLLLSANTAGTELARTLKDTCTDNKAFCVQSDIAIVLGFAGFLFLGISSLFSGFRVVCFIINGSRFYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55390			Uncharacterised protein family...		Potri.010G207000 [exp]	0	1
AT5G02440			unknown protein		Potri.001G238900 [exp]	4.00	0.7965
					Potri.015G099100 [exp]	6.16	0.7695
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Potri.008G092000 [exp]	7.21	0.6757	Pt-EIF.3
AT3G25590			unknown protein		Potri.010G133600 [exp]	8.24	0.6899
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.004G147000 [exp]	9.59	0.7264
AT5G40460			unknown protein		Potri.017G070000 [exp]	14.49	0.7152
AT2G23530			Zinc-finger domain of monoamin...		Potri.009G108400 [exp]	23.23	0.7193
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Potri.002G186400 [exp]	24.00	0.7157	IAA4.1
AT5G38895			RING/U-box superfamily protein...		Potri.010G140300 [exp]	27.27	0.7149
					Potri.011G069800 [exp]	29.34	0.6854

Compare expression of checked genes

Potri.010G207000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.