Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55400 933 / 0 OVA1 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) AT4G13780 166 / 3e-43 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) AT5G16715 56 / 7e-08 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT5G49030 45 / 0.0001 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT1G14610 43 / 0.0006 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057700 [exp] 172 / 2e-45 AT4G13780 1255 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.001G317500 [exp] 159 / 7e-41 AT4G13780 1260 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.004G090732 [exp] 48 / 1e-05 AT5G16715 590 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.017G124500 [exp] 48 / 2e-05 AT5G16715 1627 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005156 [exp] 924 / 0 AT3G55400 931 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Lus10001704 [exp] 890 / 0 AT3G55400 891 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Lus10016658 [exp] 162 / 8e-42 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10010450 [exp] 154 / 6e-40 AT4G13780 937 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10022571 [exp] 147 / 6e-37 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10001706 [exp] 125 / 7e-34 AT3G55400 119 / 3e-32 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Lus10009139 [exp] 52 / 2e-06 AT5G16715 1128 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10028505 [exp] 52 / 2e-06 AT5G16715 1520 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10033331 [exp] 44 / 0.0005 AT1G14610 1580 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10034788 [exp] 44 / 0.0006 AT1G14610 1508 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00133 [poplar] [flax] tRNA-synt_1 tRNA synthetases class I (I, L, M and V)
Representative CDS sequence Show only first row Show all	>Potri.010G207300.1 pacid=42798028 polypeptide=Potri.010G207300.1.p locus=Potri.010G207300 ID=Potri.010G207300.1.v4.1 annot-version=v4.1 ATGGCAGCTAGAATCAACTACTCTGTACAAAACACACTCTGTCTCCTAAACCCTTTAAACTATTCCATCAATGCAAAAACAACCCATTTCAAGACCGGTA TTAATTTCTCTAAAAATCTCATCTTTCCTCGTAAATTAAGGAGACCCACGTTTTGCACTTGTGCAATAAGCAATAATCATATGCAAAGTAGTGAAGCAGC TGAGACTTTTGTCCTTACAACTCCACTTTATTACGTTAATGCACCTCCTCATATGGGGAGTGCTTACACCACTATTGCTGCTGATGCCATTGCTCGATTT CAGAGGCTTTTAGGAAAGAAAGTTATATTTGTAACTGGAACGGATGAACACGGGGAGAAGATAGCTGCTTCTGCTGCTGCTGCTGGTTCCACACCGAGTG AGCATTGTGATGTCATATCTCAAGCTTACAAGACACTTTGGAAAGATTTAGAGATTACTTATGATAAGTTCATTCGGACAACTGATCCTAAGCATGAAGG AATAGTAAAGGAATTTTATTCGAGGGTTCTTGCCAAGGGTGACATTTACCGAGCTGATTATGAGGGATTGTACTGTGTCAACTGTGAGGAGTATAAGGAT GAGAAGGAGCTACTTGATAACAAATGTTGTCCTACACACCTCAAGCCATGCATTGAGCGGAAGGAGGATAATTACTTCTTTGCCCTATCGAAGTACCAAA AACAATTAGAAGAAAATTTGACACAGAATCCGAAATTTGTGCAGCCACCATTTCGTTTGAATGAGGTACAAAGTTGGATCAAAAGTGGTTTGAAAGATTT TTCAATTTCTCGTGCATCAGTGGATTGGGGCATTCCTGTTCCTAATGACAATAAGCAGACTATATATGTTTGGTTTGATGCTTTACTTGGCTATATATCA GCTCTATCAGCGGAAAATGAGCAACCAGATTTACAAACTGCTGTTTCTTCTGGCTGGCCGGCTTCACTACATTTGATTGGCAAGGACATTTTACGTTTTC ATGCAGTTTATTGGCCAGCTATGCTAATGTCTGCTGGAGTAGACCTTCCTAAGAAGGTCTTTGGGCATGGATTTTTGACAAAGGATGGTATGAAGATGGG GAAGTCACTGGGGAATACGCTTGAACCAAATGAGTTGGTTCATAACTTTGGGTCAGATGCGGTTAGGTATTTCTTCCTTAGAGAGGTGGAATTTGGTAGT GATGGGGACTATTCAGAAGAACGTTTCATCAATATTGTCAATGCACATCTCGCAAATACCATAGGAAACCTTCTTAATCGCACACTTGGACTTCTTAAAA AGAACTGCCAATCAACGTTGGCGGTTGATTCAGCTGTTGCGGCTGAAGGAAATGCATTGAAGGACACCATTGAGAAATTGGTTGAAAAGGCTCGAATTCA TTATGAAAATCTCTCACTATCGTCGGCTTGCGAGGCTGTACTAGAGATTGGTAATGCCGGGAATGCCTACATGGATGAGAATGCACCTTGGACCCGTTTC AAGCAAGGGGGTGCTGCTTCTGAAGCTGCTGCAAAGGATCTTGTAATTATATTGGAAGCAATGAGGATCGTAGCAATTGCTTTATCCCCTGTTGCCCCAA GTTTCTGTTGGAGAATATATGAACAGCTTGGCTACTCGAAGGACCATTTTAACACAGTCACCTGGAGCGGGACAAAGTGGGGTGGCCTGAAGGGTGGTCA GGTCATGGCTCAACCTAAACCAGTTTTTGCAAGGATTGAGAATAAAACAGAACTGGAAGACGAAGCAGCAACTAAGAAGCCTGTGAAAAGCAAGCAGAAA AAACCTCAGGCTCAAGTAGCTGCAGAAGCTTAG
AA sequence Show only first row Show all	>Potri.010G207300.1 pacid=42798028 polypeptide=Potri.010G207300.1.p locus=Potri.010G207300 ID=Potri.010G207300.1.v4.1 annot-version=v4.1 MAARINYSVQNTLCLLNPLNYSINAKTTHFKTGINFSKNLIFPRKLRRPTFCTCAISNNHMQSSEAAETFVLTTPLYYVNAPPHMGSAYTTIAADAIARF QRLLGKKVIFVTGTDEHGEKIAASAAAAGSTPSEHCDVISQAYKTLWKDLEITYDKFIRTTDPKHEGIVKEFYSRVLAKGDIYRADYEGLYCVNCEEYKD EKELLDNKCCPTHLKPCIERKEDNYFFALSKYQKQLEENLTQNPKFVQPPFRLNEVQSWIKSGLKDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYIS ALSAENEQPDLQTAVSSGWPASLHLIGKDILRFHAVYWPAMLMSAGVDLPKKVFGHGFLTKDGMKMGKSLGNTLEPNELVHNFGSDAVRYFFLREVEFGS DGDYSEERFINIVNAHLANTIGNLLNRTLGLLKKNCQSTLAVDSAVAAEGNALKDTIEKLVEKARIHYENLSLSSACEAVLEIGNAGNAYMDENAPWTRF KQGGAASEAAAKDLVIILEAMRIVAIALSPVAPSFCWRIYEQLGYSKDHFNTVTWSGTKWGGLKGGQVMAQPKPVFARIENKTELEDEAATKKPVKSKQK KPQAQVAAEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Potri.010G207300 [exp]	0	1
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.001G262400 [exp]	2.82	0.9832	RPL1.2
AT4G37920			unknown protein		Potri.007G000400 [exp]	3.46	0.9795
AT2G46100			Nuclear transport factor 2 (NT...		Potri.002G162800 [exp]	3.74	0.9821
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Potri.014G078800 [exp]	4.24	0.9720	CPFTSY.1
AT1G09130			ATP-dependent caseinolytic (Cl...		Potri.013G017166 [exp]	4.89	0.9818
AT1G32220			NAD(P)-binding Rossmann-fold s...		Potri.001G136900 [exp]	5.47	0.9784
AT1G45230			Protein of unknown function (D...		Potri.014G028300 [exp]	5.65	0.9726
AT4G18740			Rho termination factor (.1.2.3...		Potri.011G069300 [exp]	6.16	0.9643
AT5G46420			16S rRNA processing protein Ri...		Potri.001G353800 [exp]	7.34	0.9771
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.009G057100 [exp]	8.00	0.9778	Pt-RPL1.1

Compare expression of checked genes

Potri.010G207300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.