Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39570 560 / 0 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT2G36840 417 / 3e-144 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT4G22780 66 / 2e-11 ACR7 ACT domain repeat 7 (.1) AT3G01990 57 / 8e-09 ACR6 ACT domain repeat 6 (.1) AT1G12420 56 / 2e-08 ACR8 ACT domain repeat 8 (.1) AT1G76990 54 / 1e-07 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G69040 52 / 7e-07 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 44 / 0.0002 ACR5 ACT domain repeat 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G052900 [exp] 765 / 0 AT2G39570 574 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.001G237100 [exp] 536 / 0 AT2G39570 533 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.010G228500 [exp] 446 / 1e-155 AT2G36840 525 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.008G033200 [exp] 426 / 7e-148 AT2G36840 513 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G442600 [exp] 402 / 2e-138 AT2G36840 546 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.011G154600 [exp] 392 / 1e-134 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.003G116600 [exp] 67 / 7e-12 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.001G115600 [exp] 61 / 5e-10 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.002G074800 [exp] 61 / 6e-10 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005157 [exp] 598 / 0 AT2G39570 587 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10001702 [exp] 587 / 0 AT2G39570 582 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10004948 [exp] 498 / 9e-176 AT2G39570 479 / 7e-169 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10017470 [exp] 429 / 1e-148 AT2G36840 507 / 1e-179 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10023921 [exp] 409 / 3e-141 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10014418 [exp] 407 / 2e-140 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10005447 [exp] 387 / 7e-133 AT2G36840 385 / 2e-132 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10028812 [exp] 221 / 3e-69 AT2G36840 288 / 1e-95 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10036827 [exp] 56 / 2e-08 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 54 / 1e-07 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Potri.010G207700.2 pacid=42797754 polypeptide=Potri.010G207700.2.p locus=Potri.010G207700 ID=Potri.010G207700.2.v4.1 annot-version=v4.1 ATGGGAATTCCCGCTGACGATGTCGTTTTGATACAACAAGGTAACAGCCCTCATGACCCCACCATCGTCACCGTCAATTGCCCTGACAAGTCTGGCCTTG GATGTGATCTCTGCAGAATAATTCTCGAGTTTGGGCTGCACATTACTCGTGCAGATTTTCAAACGGATGGAAAGTGGTGTTACATAGTATTATGGGTGGT TCAACTTCAACATTCAAATTTGCTTAGACTTGATTGGGATAGCTTGAAAAACCGGCTCTTGAGAGTGTCTCCTCCATGTTTGACTCCCCTTTATTATGAT CAGAAACTGAATGGTTCCTCGGCTGCTCCTTCTGTATATCTGTTGAAGTTTTGCTGTGTTGACCGGAAAGGATTATTACATGATGTTACTGAAGTTCTAA CTGAGCTTGAATTTACAATTCAAAGACTGAAAGTGATGACAACACCAGATGGGAAAGTTGTAGACTTGTTCTTCATTACAGATGGAAGGGAGCTCTTACA CACGAAAAAAAGGCGAGATGACACGTGTCGATATTTGTATGATGTCTTCAGAGAATATTGTATTGGGTGTGAACTTCAGTTGGCAGGTCCTGAATGTGAT ACTCAGCGGAATTTATCTTCCCTCCCTTTGGTAGTTGCAGAAGAATTGTTTAGTTGTGAGCTATCAGAAAAGGAATCCTGTATGCAAGCACTTAGGACGG CTACAACATCACCAAAGAAGGCCATCGTTACAGTGGATAATCTTTTGAGCCCAGCTCATACATTGCTTCAAATACAATGTGTTGATCAAAAAGGTCTATT TTATGACATCTTGAGAATTTCAAAGGACCTGAATATCCAGGTAGCTTATGGAAGATTCTCGTCTAGCATAAAAGGATACCGTAACATGGATCTATTTGTT CAGCAAACAGACGGGAAGAAGATATTGGATCCTAAGCTTCTAGACAATCTTTGTTCTCGATTGAAGGAGGAGATGCTTCATCCATTGCGAGTGATCATTA CCAACAGAGGCCCAGATACGGAGCTCTTAGTTGCTAACCCTGTTGAGTTATGTGGCAAGGGAAGACCGCGTGTATTTTATGATGTTACTTTAGCTCTGAA AAAGCTGGGAATATGCATTTTTTCGGCTGAAATCGGAAGGCACTCAACTCAGGATCGCCAGTGGGAAGTCTACAGATTCCTCTTGGTTGAAAATGGTGAA TTTCCATTAGCAAGTGGTCAAGCCAGAAATCAAATGGCAGCCGGAATTAGGAGAACATTAATGGGCTGGTAG
AA sequence Show only first row Show all	>Potri.010G207700.2 pacid=42797754 polypeptide=Potri.010G207700.2.p locus=Potri.010G207700 ID=Potri.010G207700.2.v4.1 annot-version=v4.1 MGIPADDVVLIQQGNSPHDPTIVTVNCPDKSGLGCDLCRIILEFGLHITRADFQTDGKWCYIVLWVVQLQHSNLLRLDWDSLKNRLLRVSPPCLTPLYYD QKLNGSSAAPSVYLLKFCCVDRKGLLHDVTEVLTELEFTIQRLKVMTTPDGKVVDLFFITDGRELLHTKKRRDDTCRYLYDVFREYCIGCELQLAGPECD TQRNLSSLPLVVAEELFSCELSEKESCMQALRTATTSPKKAIVTVDNLLSPAHTLLQIQCVDQKGLFYDILRISKDLNIQVAYGRFSSSIKGYRNMDLFV QQTDGKKILDPKLLDNLCSRLKEEMLHPLRVIITNRGPDTELLVANPVELCGKGRPRVFYDVTLALKKLGICIFSAEIGRHSTQDRQWEVYRFLLVENGE FPLASGQARNQMAAGIRRTLMGW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Potri.010G207700 [exp]	0	1
AT5G52882			P-loop containing nucleoside t...		Potri.015G026900 [exp]	1.41	0.7722
AT2G27830			unknown protein		Potri.004G188600 [exp]	2.82	0.7365
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Potri.008G067000 [exp]	5.29	0.7198	Pt-ATE1.3
AT5G59960			unknown protein		Potri.009G028500 [exp]	7.48	0.7299
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G119200 [exp]	8.94	0.6955
					Potri.005G118650 [exp]	13.03	0.7243
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.018G118143 [exp]	13.85	0.7227
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Potri.012G021800 [exp]	29.29	0.6911
AT1G30760			FAD-binding Berberine family p...		Potri.006G128900 [exp]	42.04	0.6776
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.007G135100 [exp]	47.32	0.6784

Compare expression of checked genes

Potri.010G207700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.