Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65520 276 / 3e-94 PEC11, ECHIC, ATECI1 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) AT4G14440 223 / 1e-73 HCD1, ATECI3 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) AT4G14430 192 / 2e-61 PEC12, IBR10, ECHIB, ATECI2 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) AT4G16210 45 / 2e-05 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073700 [exp] 217 / 4e-71 AT4G14430 293 / 5e-101 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Potri.008G164900 [exp] 216 / 1e-70 AT4G14430 280 / 1e-95 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Potri.008G052801 [exp] 138 / 2e-41 AT1G65520 140 / 3e-42 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Potri.008G104500 [exp] 44 / 3e-05 AT4G16210 422 / 3e-151 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.010G146400 [exp] 42 / 0.0001 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001701 [exp] 339 / 4e-119 AT1G65520 270 / 5e-92 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Lus10005159 [exp] 293 / 1e-100 AT1G65520 279 / 4e-95 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Lus10021207 [exp] 224 / 1e-73 AT4G14430 303 / 1e-104 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Lus10022199 [exp] 223 / 3e-73 AT4G14430 310 / 2e-107 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Lus10041153 [exp] 221 / 2e-72 AT4G14440 306 / 4e-106 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) Lus10041154 [exp] 215 / 3e-70 AT4G14440 306 / 5e-106 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) Lus10005158 [exp] 140 / 2e-42 AT1G65520 140 / 1e-42 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF00378 [poplar] [flax] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Potri.010G207800.1 pacid=42800119 polypeptide=Potri.010G207800.1.p locus=Potri.010G207800 ID=Potri.010G207800.1.v4.1 annot-version=v4.1 ATGTGTACTCTAGAGAAGAGGGGCGATATCTACATCCTCACTTTAACTGGCTCAGATGAGCACCGGTTAAACCCCACCCTCATTGACTCCATCTGCTCAG CTCTGCGTCGTGTTCGCGCCGAGCCAGCTTCCCCATCCTCAGCTCTCGTCACTATAGCCGAAGGCAGGTTCTTCTCCAATGGATTTGATCTTGCCTGGGC GCAATCATCCCAACCACGTCGCGAGCTCATGTCTGCAAAGCTCCAGTTACTGGTAAAGGAATTGATATCTCTGCCCATGCCAACAATAGCTTCAGTCACG GGCCATGCGTCAGCTGCTGGAATGATCTTAGCTCTGAGCCATGACTATGTGCTCATGAGGAAGGACAGGGGGTTTCTTTACATGAGCGAGCTTGATATTG GACTTGTGTTGCCGGATTGGTTCATGGTATTATTGAAGTGCAAGATTGGAGATGCCAGAGTCAGGAGCGAGGTAGTTTTGACAGCAGCAAAATTGACAGC AGAGATGGCTGCAGTGAGGGGGATTGTGCACTCGGCGCATGACGGTGCAGAGGAGACAGTTGAGGCAGCGATTAGGTTGGGGCAGGAGTTGGTGAAAAGA GGGTGGGATGGTAATGTGTATGGGAAGAATAGGATGGTGGTTTTGAAAGAGGTTCTGGAGAAAATAGGGACTGTGCCAGGGGAGGCTAAGACCATGTCAA AACTGTAA
AA sequence Show only first row Show all	>Potri.010G207800.1 pacid=42800119 polypeptide=Potri.010G207800.1.p locus=Potri.010G207800 ID=Potri.010G207800.1.v4.1 annot-version=v4.1 MCTLEKRGDIYILTLTGSDEHRLNPTLIDSICSALRRVRAEPASPSSALVTIAEGRFFSNGFDLAWAQSSQPRRELMSAKLQLLVKELISLPMPTIASVT GHASAAGMILALSHDYVLMRKDRGFLYMSELDIGLVLPDWFMVLLKCKIGDARVRSEVVLTAAKLTAEMAAVRGIVHSAHDGAEETVEAAIRLGQELVKR GWDGNVYGKNRMVVLKEVLEKIGTVPGEAKTMSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Potri.010G207800 [exp]	0	1
AT1G19020			unknown protein		Potri.015G070700 [exp]	2.23	0.8692
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074700 [exp]	4.89	0.8181
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.001G457000 [exp]	5.65	0.8682	Pt-HMGR3.1
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.011G153500 [exp]	12.44	0.8118
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Potri.001G214500 [exp]	13.26	0.7728
AT5G67390			unknown protein		Potri.007G053300 [exp]	13.41	0.7870
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G022600 [exp]	22.91	0.7753
AT1G07300			josephin protein-related (.1)		Potri.001G249500 [exp]	26.07	0.8105
AT2G25735			unknown protein		Potri.006G244200 [exp]	28.77	0.7593
AT1G67050			unknown protein		Potri.017G115801 [exp]	29.66	0.8124

Compare expression of checked genes

Potri.010G207800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.