Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12590 1504 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G052700 [exp] 1895 / 0 AT3G12590 1518 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005160 [exp] 1576 / 0 AT3G12590 1536 / 0.0 unknown protein Lus10001698 [exp] 1009 / 0 AT3G12590 973 / 0.0 unknown protein Lus10001699 [exp] 443 / 3e-145 AT3G12590 453 / 4e-150 unknown protein Lus10001700 [exp] 47 / 3e-06 AT3G12590 47 / 5e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G207900.3 pacid=42798327 polypeptide=Potri.010G207900.3.p locus=Potri.010G207900 ID=Potri.010G207900.3.v4.1 annot-version=v4.1 ATGTCGTCTACCTTCAGTCCGTCACGAAATAGTCCTGGCAGCTCCAGGCTACAGCTCCAGCTTGGTGTTGTTTCTAGGTTGAGATCTTCGTCTTTAAAGA AGCCGCCTGAGCCGCTCCGCCGTGCCGTTGCTGATTGTTTGTCCTCCTCCTCTGTTGCCTCCACTTCTCAACATGGAATTTCCTCCGTTACTCTGACTGA TGCCCCTAGAACGCTTCGTGATTATCTGGCAGCCCCTACAACTACCGACCTGGCTTATGGTGTAATTCTAGAACATACAATTGCAGAGAGGGAACGCAGT CCAGCAGTAGTTGGAAGATGCGTGGCACTTTTGAAGCGACACCTTCTACGATATAAACCAAGTGAGGAGACATTATTTCAGATTGATCGGTTTTGTGTGA GCTTAATTGCCGAGTGTGATATTAGCCTAAAACGAAGATCGTTAACATGGTCTGGATCTCCAAATCAACAATCTGTTTCATCAACATCTACAATTTATTC ACCTTCTCCTCCTGTGTGCATTTTTGCTTCTGGAGCTCTTGTAAAGTCATTAAATTATGTGCGTTCCCTTGTGGGCCAACATATTCCAAAGCGATCTTTC CAGCCAGCAGCTTTTGCTGGAGCTCCCTCTGTGTCAAGGCAGTCACTTCCAACTCTATCATCTTTGTTGAGTAGATCTTTTAATTCCCAATTAAGCCCTG CAAATGGGGTGGAATCCTCGGAGAAGAAAGACACTACTACTTTACCTGTTTCAAACTTATCAAATGTTGAAAATGTTGAGATGGCAGAGGATCTTGATTA CATTGCGGTTGATGTTTTGCAGTGGCGTTGGGTTGGGGGACCATTTCTATCAACTGAGAGTGATCGTCCTGTGGATCTCCATGATGTGAGCATATGCAAA TTCCTAGAATTAGGTGCTGCAGCTCTGCTTGTAGGAGACATGGAAGCTAAAATGCAGGGTCAGCCTTGGAAATATTTTGGAACATCTGATATGCCTTATC TTGATCAATTATTGCAGCCTTCATCAGCCACAACAATTACCAATTCAACCTCAGCTCGTCCCCACCTGAGAGCAATAACAGCATCTAAGCGCAGTAAAGC AGGACCTCGACAAATCTGGGAGGATTCTCCTGTGAGTACGTTTCGCCCACGTGCTCGACCGCTCTTCCAATATCGTCACTACAGTGAACAACAACCTTTA CGTTTAAACCCTGCTGAGGTATGTGAGGTCATTGCTGCAGTTAGCTCAGAGACATATTCTTCTAGTGCCAATCATTTGACTATATCATCTAGATTAAGTA ATAACAGTGGAAAGCCGTCAATGGATGTGGCTGTGAGTGTTCTTATTAAACTTGTCATTGACATAAGGTCACTTGATTTTTTTTGTAGGTATGTTCTGGA CTCTGGGACAGCTGCTCCTCTCACTCTGTCAATGCTTGAGGAAATGCTTAATTCTTCAAAAGCTGCTTGTAGGGTCCGTGCCTTTGATTTAATTCTGAAC CTCGGGGTTCATGCTCATTTGTTGGAACCAATGTTGATCAATGATACTTCTACTACAATTGAAGAAGAGTATTCACAAGAATCATTTTATGATTGTGAAG AACAACTTCCAACACAGGGGAACCAGAAAGCCGATTCTGTTGACAAGCTGGGCACTTCATCAGCAATTGATAACTTTGAGTCATGGATTTTAAATATTTT ATACGAGATACTTCTTCTTCTTGTCCAGACAGAGGAGAAAGAACAATCTGTTTGGGCCTCTGCTTTAAGCTGTTTGCTTTATTTTGTATGTGATAGAGGC AAAATCTTAAGAAACCGATTAGAAGGCCTTGACATAAGGGTCATTAAAGCCTTAATAGAGACTAGCAGGAAGAATTCTTGGGCAGAATTGGTTCATAGCA AGCTCATTTGCATGTTAACAAATATGTTTTATCAAGTTTCTGATGGGTCTATGATGTTTGTCTCAACAAACCCGGTGTTTCTCATAGACCAGCTTGACCT GATTGGGGGAATTGAGTTCATTTTCTATGAGTATTCTCTGGCTAACTTGAGAGAAGAGAGGAGAAATCTATACTTGATTCTTTTTGAATATGTGTTGCAT CAAATAAATGAAGCTTGCATAGTTGCTGGGCTGTCTGAATATGGTGACAATGAGATTCAACCTATTGCAACTCTCCTCACTCTTGCTAATGCACCTGAAG CTCTTTACATGTCTGTTAAGTTGGGTGTTGAAGGCATTGGGGAGCTTCTGAGAAGATCAATTTCTTCTGCATTATCTAGATATCCCAACAATGAACGACT GAATTTGCTCTTGGAGAATATAGCAGAGAAATTTAATGCAATAATCAGTTCCTTTACTCATTTGGACAAAGAGTTCTCTCATCTAATTGAAATAACCCAA TCTTACAAGTTTCTGGAAAGTTTGGAGAGTGCAATACTAACAAATGGTGTCGGCATGAAATCAAAACTATCTTGGGCCACTTTGCATTCTCTTCTTCACT CAGAAAGGATTGCTTACCGTCGGAATGGCTATACCTGGTTGGGTGATTTGCTTATTGCTGAAATTACCGAGGGAAGCAATGTGAATGTATGGTTAAATGT CAAAGAATTGCAGGGTAAAATTGCCTATGCTGGTGTACATGATTCTTCAGTTTCGTCAGATGTTCCTGTGTCAATTTGGCTTATGTGTGGTCTTTTGAAG TCCAAACATAATATCATCAGATGGGGCTTCCTGTTTGTTCTAGAGAGACTTCTCATGCGCTGCAAATTTTTGTTAGACGAGAATGAAATGCAATCCTCAA GGAGCAATGATGCCAGTCACGAGCATGCAGATAGCCGACTTGATAAAGCAAATGCTGTGATAGACATTATGAGCAGTGCTCTATCCTTGGTGGCTCAAAT AAATGAAACAGATCGCATCAACATTTTGAAGATGTGTGATATATTATTCTCTCAATTGTGCCTGAAAGTTCTCCCTGCAACTGCAATCCCAAATGGTGAA GGAATGCAAAAGAGTAAAGTTAATGGTGGAGCGGATGAAAATAAAAAAATTGATACCGGTGAGCGCATCTCTCGATTAGAAAAAATTGATGACTTTCGCT GGAATGAATTCATGGAAAAAGCTGATAGCAGATCCAGCTACAGCATTAATAGTTCTCTCATGTGCAATACAACATCAATGACAGCACTGCTTCTCCAAGG ACAGGCTATTGTTCCTATGCAATTAGTTGCACGTGTTCCTGCTGCGTTGTTTTATTGGCCACTTATTCAGCTAGCTGGTGCAGCAACAGACAATATTGCT TTGGGTGTTGCTGTTGGAAGCAAAGGAAGAGGAAACCTTCCTGGTGCAGCGTCAGATATTAGGGCAACTCTTCTGTTGCTTCTAATCGGTAAATGCACGG CAGATCCTTCTGCTTTCCAAGAAGTCGGTGGAGAAGAATTTTTTAGGGAACTTTTAGATGATACAGATTCAAGGGTAGCGTATTACTCTTCAGCTTTTCT TTTAAAGAGAATGATGACAGAAAAACCTGATGAGTACAAGCACATGCTTCAGAATCTCATCTTTAAAGCACAGCAGAGCAACAATGAGAAGCTGTTGGAA AATCCGTACCTTCAGATGCGTGGCCTGCTTCAACTCTCAAATGATGGGCTCTAA
AA sequence Show only first row Show all	>Potri.010G207900.3 pacid=42798327 polypeptide=Potri.010G207900.3.p locus=Potri.010G207900 ID=Potri.010G207900.3.v4.1 annot-version=v4.1 MSSTFSPSRNSPGSSRLQLQLGVVSRLRSSSLKKPPEPLRRAVADCLSSSSVASTSQHGISSVTLTDAPRTLRDYLAAPTTTDLAYGVILEHTIAERERS PAVVGRCVALLKRHLLRYKPSEETLFQIDRFCVSLIAECDISLKRRSLTWSGSPNQQSVSSTSTIYSPSPPVCIFASGALVKSLNYVRSLVGQHIPKRSF QPAAFAGAPSVSRQSLPTLSSLLSRSFNSQLSPANGVESSEKKDTTTLPVSNLSNVENVEMAEDLDYIAVDVLQWRWVGGPFLSTESDRPVDLHDVSICK FLELGAAALLVGDMEAKMQGQPWKYFGTSDMPYLDQLLQPSSATTITNSTSARPHLRAITASKRSKAGPRQIWEDSPVSTFRPRARPLFQYRHYSEQQPL RLNPAEVCEVIAAVSSETYSSSANHLTISSRLSNNSGKPSMDVAVSVLIKLVIDIRSLDFFCRYVLDSGTAAPLTLSMLEEMLNSSKAACRVRAFDLILN LGVHAHLLEPMLINDTSTTIEEEYSQESFYDCEEQLPTQGNQKADSVDKLGTSSAIDNFESWILNILYEILLLLVQTEEKEQSVWASALSCLLYFVCDRG KILRNRLEGLDIRVIKALIETSRKNSWAELVHSKLICMLTNMFYQVSDGSMMFVSTNPVFLIDQLDLIGGIEFIFYEYSLANLREERRNLYLILFEYVLH QINEACIVAGLSEYGDNEIQPIATLLTLANAPEALYMSVKLGVEGIGELLRRSISSALSRYPNNERLNLLLENIAEKFNAIISSFTHLDKEFSHLIEITQ SYKFLESLESAILTNGVGMKSKLSWATLHSLLHSERIAYRRNGYTWLGDLLIAEITEGSNVNVWLNVKELQGKIAYAGVHDSSVSSDVPVSIWLMCGLLK SKHNIIRWGFLFVLERLLMRCKFLLDENEMQSSRSNDASHEHADSRLDKANAVIDIMSSALSLVAQINETDRINILKMCDILFSQLCLKVLPATAIPNGE GMQKSKVNGGADENKKIDTGERISRLEKIDDFRWNEFMEKADSRSSYSINSSLMCNTTSMTALLLQGQAIVPMQLVARVPAALFYWPLIQLAGAATDNIA LGVAVGSKGRGNLPGAASDIRATLLLLLIGKCTADPSAFQEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEKPDEYKHMLQNLIFKAQQSNNEKLLE NPYLQMRGLLQLSNDGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12590			unknown protein		Potri.010G207900 [exp]	0	1
					Potri.019G023500 [exp]	3.16	0.7977
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.016G132000 [exp]	4.24	0.8159
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Potri.004G174700 [exp]	5.83	0.8098
AT1G05790			lipase class 3 family protein ...		Potri.014G150800 [exp]	7.07	0.7710
AT5G65290			LMBR1-like membrane protein (....		Potri.005G072100 [exp]	7.74	0.7641
AT5G27240			DNAJ heat shock N-terminal dom...		Potri.005G043200 [exp]	8.48	0.8048
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.019G047300 [exp]	11.31	0.8019
AT3G53270			Small nuclear RNA activating c...		Potri.004G126720 [exp]	13.41	0.7847
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Potri.012G075932 [exp]	13.85	0.7305
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Potri.002G255800 [exp]	14.07	0.7690

Compare expression of checked genes

Potri.010G207900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.