Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39580 836 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G052500 [exp] 2671 / 0 AT2G39580 818 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029459 [exp] 1257 / 0 AT2G39580 746 / 0.0 unknown protein Lus10005958 [exp] 1053 / 0 AT2G39580 565 / 1e-173 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10650 [poplar] [flax] zf-C3H1 Putative zinc-finger domain
Representative CDS sequence Show only first row Show all	>Potri.010G208200.2 pacid=42799112 polypeptide=Potri.010G208200.2.p locus=Potri.010G208200 ID=Potri.010G208200.2.v4.1 annot-version=v4.1 ATGGCGTCAGATAACCCTAGTCAACCAGAGCTCGCGACTAAAGCAAGAGAAGAAGGAGAGGTCTCTTCTTCATCCAACGACGACCAAAATCCTATTTGCT CTGCTGCACCATCTGCTGATGCTGTTAACCCACCTGCTTCTGCAAGGACCATTCTGGTTCCTCCAATGAACAAATTCACTTTAGCCAATCGGGCTGGTAA GGCCAATTTTAGCACCAATCCCGCAAGATCTGCTGATCCCAATCTCCGAACATCACAACAACCAAATAATAACAAGAGCTTTGACAAAAACAGAGTGCCA CATGTATCTGCTAATCCTGGAAAGTTGGCACCTTCAGGGGCTGATGATAGCCTAGTGATAAGATTTTTTTCAGATGATGAAAGTGGCAGTGAATCTGAAG ATGGAGAAGACAAATCTTTAAAAACTAAACTCAACATGACTGTGGTTAATGAAAATGGAAGGCTGCCCTCCACTTCATCAACAAAATCAAGCATGTCACA GCAGGCTACAAGAAATGTGAACAGTATTCCCAAGAAATCATCAATGAGTTGCTCATTTAACTCATCAATGACAAAGACAAACAGAGTTGCCAATTCCAGG GGTGCTGGCTCCTCATCTGTTGGGCAAGGTTCTCAAGTAAAAAAATTTAATTCCATCAAAAGAAATCTTGCAAGCCTAGAGCATGGTCTTGAGCTAGGTG TGGATTTGAACAGCACTAAAGTTCGGGACTTGAGGCAGCAGATTGCACTTCGGGAAAGGGAACTAAAGCTTAAGGCAGCTTCACAAAAGAAGGAATCTCC TTCAGTTTCTGGCAAGGATTACAAGTCTACAAACATTTCTATTGCTGCAGCCAGGAAGTCTAATGCAGCTTTTTATGAAGTTGGGCAATTAGCCCCAAAA GAACCGGACAGGAAACGCTTAAAAGTTGGTGGATCTTATTCTAAACAGTTAAATTCAGATGGCCAACAAAAAATGCTTGCAACAACATATAATTTACCTT CAAAGGAACAAGCACCGGAGAGCAGTGGTTTGCAGGATAGAAATATGGACGATTATAGCCAGAACGAAAGGCTGATGAAAGTAACAAAGTCAAGTGTAGT TAAATGGGAAAGGCAAGACTGTAGGCGGGTGGATATTTCATCAGCAAAGCTACCTGCTTCTAATGTCAATCATAATTCCAGCCAGTCTGACATGAGCAGA ATGCAGGTGGATCCTTCTGTTGTATTGAACCAGACCCCACCACTGACTAATGCAAATACTAATACTTTACCAGAGAATAGAAAGAGTGTTGAATCAAATC CAGTGAAGAATTGTGGAACCCAGCCACCAGCTTGCTTGTTAAAGACATCAACTAGTGGACAGAATTTAATAAACAAATTTGAGCATCTGCAAGGCATATA CGGTGACAAGCCTTCTTGTCAAGCATCTCTGAATTTAAACCCTTGGAATTGTTTGGGAACTGTAAATGTGGCAGATCATAGAAGCATAGATATGCATCTT GTTGAAATGGAGGAATCATTAGACAAGGAGCTGGATGAAGCACAAGAGCACAGGCGCAAATGTGAAATTGAAGAAATAAATGCACTTAAAGCTTATCGAA AATCACAGAGGGCTTTGATTGAGGCTAATTCTAGATGTACAGAACTTTATCGCAAGAGGGAACTGTACTCTACTCATTTTCGATCTCTCATTGTGAATGA TTCCAATTTGTTTTTGCCCTCCAGGCAGCATGAGCACGTTGGAACTGGGGTGAATTGTGGAAATGTATCTAGAAATGTAAATTTAACACCCTCGCCAAAT GATCAGATGCAGCCTGAGTATGATGGCTGTAACCAGCCTGGGTACGATTCAGTCACCCTCTCAAATTTACTTTATCAGCATGTAAATGGCCATAGTTTGG GATCTGAGCCATGCAGTGAACTGGATGCTAGTACATCAGAGCCATTGCCCCGCAACAGCCTGATTGCTGCTAATGGAGTAAGCTTTCAATCCAATGATTC TAATATTTCAGCAGATGAAGATGAAGAAACATTTCCATTGGACCATGAGACTGATCAGCATAGCTTCAAAATTCAGCAAGGAGATCAAAATTCTGTGGGA AGGGAAAACCACAGAGATTATCCCCCAAACAAAAATCCCTCTGTTCATGCACCTCAGGATTCTTTGATTCTTGAATCAAAATTAAGATCCAAACTATTTG CACGACTACCAATCAGAACCTTTTCAAAGAATGGTGGTTCATCCACCATGGAGCCTGTAGATGAACCAGGGACTGAAATTGACAACGGAAGTGAAAGAAC CCAGGGAAGCAATGGCAGTGTGCGATTGTCAGAAGCACAGAAAAATCAACATTATGACCTTGAAGGCAATGATAATCCTGAAACAATAATGTCTGAGCTT CCTGTTCAGATTCAGAGCCATGAAAAGAATTCTTCAAATTTTCATTCTGCTGCTGATTCCAAGGACAATTTCACAGGAGGTCATCAGTTGACAACGTCAA TCATATCTTCACCTCCTTTAGTTTTGAGGAGTGCATTTGCTCAAATGAAAGTTATGTACCCAATGACTTCAATAGAATCACAACATATAAAAAGTCAACA AAATTATACCCGTGGTGGTTTCAGTGGAGAGGGTGGTTGCATGGATTCTGAGGAAATCCAGTGTGACAAGGCGATAGCAAGCTCAAAGGATGAGGGTCTA AAGGATATATGCGGAATTGAAATTGGCACATTTACCCACAATGTTGCGGTTGACCCATTTTGGCCACTCTGCATGTATGAACTTAGAGGAAAATGCAACA ATGATGAATGCCCTTGGCAACATGCTAGGGACTTCACTGATCAAAATGCGCATCAAAATCAGCACGATGATTCTGATAGTGCCGATTGTCAGGTTGGATT AACACTGCATCAACAAAAAAGTAGTGGTGGAACAGAACTTTCCAAGTGTCACATTGCATTGATTCCACCAACTTATCTTGTTGGCTTCAATATGTTGAGA TCTGATTCACATAAATCTGTCATTGCACCGAGAAATGGTCAGCGCTGGCAAAAACAGTTCAGTATTTGCTTAGCTCTATCAAGTTTGCTTCAACAAGATT TACTTGTTGATCAGCCTTCTTTCCGTGCTAATGATGGTTGCATTGAGGTCCGTGGGAGTTGGAATGGACAGGCATCATACTTTCAGAGTAGAAAGAGCGT AGCGAATCATCTCAATCAAGCATTAACCAGCAGCGTGCTGTCCCTTGAAATGGCTCTCGTTATTCTCAGTCAGGAGGCTGACAAACTGGAGGGTATGAAA AAGTCTCTCTCCATGCTGTCACGAGCTATTGAGGTTGATCCAACATCTGAAGCTCTGTGGATGATGTATCTGCTCATTTACTACAGCAACATTGAGTCTG TTGGGAAGGATGACATGTTCTCCTATGCGGTTAAAAACAGCAACAGATCCTATGGACTTTGGCTCGTGTACATTGACAGTCGTATACATCTTGATGATCG ACTGGTTGCGTATAATGCTGCCCTCACAGCGCTTTGCCACCATGCATCTGCTTTTGATAGGGGCAATGTGTATGCTAGTGCATGCATCTTAGATCTGTTT TTACAGATGATGGATTGTTTGTGCATGTCTGGGAATGTTGGCAAGGCCATTCAGAAAATCCAAGGACTCTTCCCTGTGGCAGCTAATTCAGATGAGCCTC CCTCTCATTTGCTCTCTGATATCCTCACATGCTTAACGATTTCTGACAAATATATCTTCTGGGTTTGTTGTGTGTACTTAGTTATTTACAGGAAGTTACC TGATGCTATTGTACAGCAGTTTGAATGTGAGAAAGAACTCCTTGCAATTGAATGGCCTTCTGTTCATTTACAAAATGAAGAGAAGCAGAGGGCTGTTAAG CTCGTTGAGATGGCTGTGGATTCTGTTAAAGTGTCTGTCAATAGTGAATCACTTGATAGTGACACAAATGTCAGACTGGCTCAACAATTTGCTCTCTGCC ATATTAGGTGTACGCTAGTTCTTGATGGTCCAGCTTGCTGTCAGAATTTGTTGGGCAAGTATATGAAGTTGTGCCCATCCTGTGTAGAACTTGTTCTTTT GTCATCAAGGCTTCAAACAAATGGCACAGGTGGTGTGAGTTTTGAAGGGTTTGAGGGAGCCATTAGTAATTGGCCAAAAGAAGTCCCTGGAATTCATTGT ATCTGGAATCAATATATTGAGTATGCCCTCCAAAAAGAAGGTCCCAATTTTGCAAAAGAACTGACTGTTCACTGGTTTAACTCCGTTTCAAAAGTTCGAT ATCCTCTGAATGAAATTTTGGATACAGTGGATGGTAATAGCTCACATGGATTATTGGAATTGGCTTCAGCATCAAATCCGTACTTTCTGACATCCAGTTC TAATCAGATGGAAATAATGTTTGGATTAATTAATCTCTCTCTTGCCAAATTATTGCACAATGACCACATTGAAGCTCACGTTGCCATTGACAGGGCACTG AAGGCTGCACCTCCACAGTACATCAAACATTGCTTGAGAGAACATGCTGTGTTCCTGCTTAACTATGGGTCACAATTAAAGAAGGATGCTCCAGTCAGTG AGCAATTAAAAATTTTGAATGGTTATTTGAATGATGCCCAGGCTCTCTCAGCTTATGAACCACTATCTAGACGATTCATTGACAGCATTGAGAAGCCAAT AGTTCAGCAGCTAATCCGTAACATATTGAGTCCAGTTTCATCTGACTTCTCTTTGGTGAATTTTGTACTTGAAGCGTGGTATGGTCCCTCTCTTTTACCC CCAAAGTCAAACCAGCCAAAGGATTTGGTGGATTTTGTTGAAGCCATCTTTGAGATAGTGCCATCCAACTACCCGTTAGCATTTTCTGTTTGTAAGCTCT TGTGCAGAGGCTACAGCTCTATTAATGTTACTTCTGATAGTGTCCTGTACTGGGCATGCTCAATCTTGGTCAATGCAATCTTTCATGCTATTCCAATACC ACCAGAATATGCATGGGTTGAAGCTGCGGGTATTTTGGGTGACATTTCAGGTATCGAGCTCATTTCTGATAGTTTTTACAAGAAAGCTTTATCAGCACAT CCATTCTCTGTGAAGTTGTGGACTTGCTATTATAATCTATCAAAGACTAGGGGATATGCAAGCACTGTTGTCCAAAAAGCAAGAGAGAGGGGTATTGAAG TTGGTTGA
AA sequence Show only first row Show all	>Potri.010G208200.2 pacid=42799112 polypeptide=Potri.010G208200.2.p locus=Potri.010G208200 ID=Potri.010G208200.2.v4.1 annot-version=v4.1 MASDNPSQPELATKAREEGEVSSSSNDDQNPICSAAPSADAVNPPASARTILVPPMNKFTLANRAGKANFSTNPARSADPNLRTSQQPNNNKSFDKNRVP HVSANPGKLAPSGADDSLVIRFFSDDESGSESEDGEDKSLKTKLNMTVVNENGRLPSTSSTKSSMSQQATRNVNSIPKKSSMSCSFNSSMTKTNRVANSR GAGSSSVGQGSQVKKFNSIKRNLASLEHGLELGVDLNSTKVRDLRQQIALRERELKLKAASQKKESPSVSGKDYKSTNISIAAARKSNAAFYEVGQLAPK EPDRKRLKVGGSYSKQLNSDGQQKMLATTYNLPSKEQAPESSGLQDRNMDDYSQNERLMKVTKSSVVKWERQDCRRVDISSAKLPASNVNHNSSQSDMSR MQVDPSVVLNQTPPLTNANTNTLPENRKSVESNPVKNCGTQPPACLLKTSTSGQNLINKFEHLQGIYGDKPSCQASLNLNPWNCLGTVNVADHRSIDMHL VEMEESLDKELDEAQEHRRKCEIEEINALKAYRKSQRALIEANSRCTELYRKRELYSTHFRSLIVNDSNLFLPSRQHEHVGTGVNCGNVSRNVNLTPSPN DQMQPEYDGCNQPGYDSVTLSNLLYQHVNGHSLGSEPCSELDASTSEPLPRNSLIAANGVSFQSNDSNISADEDEETFPLDHETDQHSFKIQQGDQNSVG RENHRDYPPNKNPSVHAPQDSLILESKLRSKLFARLPIRTFSKNGGSSTMEPVDEPGTEIDNGSERTQGSNGSVRLSEAQKNQHYDLEGNDNPETIMSEL PVQIQSHEKNSSNFHSAADSKDNFTGGHQLTTSIISSPPLVLRSAFAQMKVMYPMTSIESQHIKSQQNYTRGGFSGEGGCMDSEEIQCDKAIASSKDEGL KDICGIEIGTFTHNVAVDPFWPLCMYELRGKCNNDECPWQHARDFTDQNAHQNQHDDSDSADCQVGLTLHQQKSSGGTELSKCHIALIPPTYLVGFNMLR SDSHKSVIAPRNGQRWQKQFSICLALSSLLQQDLLVDQPSFRANDGCIEVRGSWNGQASYFQSRKSVANHLNQALTSSVLSLEMALVILSQEADKLEGMK KSLSMLSRAIEVDPTSEALWMMYLLIYYSNIESVGKDDMFSYAVKNSNRSYGLWLVYIDSRIHLDDRLVAYNAALTALCHHASAFDRGNVYASACILDLF LQMMDCLCMSGNVGKAIQKIQGLFPVAANSDEPPSHLLSDILTCLTISDKYIFWVCCVYLVIYRKLPDAIVQQFECEKELLAIEWPSVHLQNEEKQRAVK LVEMAVDSVKVSVNSESLDSDTNVRLAQQFALCHIRCTLVLDGPACCQNLLGKYMKLCPSCVELVLLSSRLQTNGTGGVSFEGFEGAISNWPKEVPGIHC IWNQYIEYALQKEGPNFAKELTVHWFNSVSKVRYPLNEILDTVDGNSSHGLLELASASNPYFLTSSSNQMEIMFGLINLSLAKLLHNDHIEAHVAIDRAL KAAPPQYIKHCLREHAVFLLNYGSQLKKDAPVSEQLKILNGYLNDAQALSAYEPLSRRFIDSIEKPIVQQLIRNILSPVSSDFSLVNFVLEAWYGPSLLP PKSNQPKDLVDFVEAIFEIVPSNYPLAFSVCKLLCRGYSSINVTSDSVLYWACSILVNAIFHAIPIPPEYAWVEAAGILGDISGIELISDSFYKKALSAH PFSVKLWTCYYNLSKTRGYASTVVQKARERGIEVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39580			unknown protein		Potri.010G208200 [exp]	0	1
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.013G092100 [exp]	1.41	0.8643
AT4G27220			NB-ARC domain-containing disea...		Potri.001G426660 [exp]	2.00	0.8537
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Potri.001G163200 [exp]	3.00	0.8186
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Potri.010G065000 [exp]	4.69	0.8165	CHM.1
AT5G25560			CHY-type/CTCHY-type/RING-type ...		Potri.006G245400 [exp]	5.65	0.8040
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433700 [exp]	6.48	0.8380
AT3G61540			alpha/beta-Hydrolases superfam...		Potri.014G090601 [exp]	7.07	0.7912
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.010G142700 [exp]	8.94	0.8207
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.002G103132 [exp]	9.48	0.7857
AT3G50430			unknown protein		Potri.005G133500 [exp]	9.53	0.8302

Compare expression of checked genes

Potri.010G208200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.