Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54980 176 / 2e-56 Uncharacterised protein family (UPF0497) (.1) AT1G17200 122 / 2e-35 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT3G14380 89 / 1e-22 Uncharacterised protein family (UPF0497) (.1) AT4G16442 76 / 2e-17 Uncharacterised protein family (UPF0497) (.1) AT2G35760 62 / 4e-12 Uncharacterised protein family (UPF0497) (.1) AT4G25830 59 / 2e-11 Uncharacterised protein family (UPF0497) (.1) AT2G36100 54 / 3e-09 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT2G27370 50 / 1e-07 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT5G15290 47 / 8e-07 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT5G06200 43 / 3e-05 CASP4 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G052451 [exp] 149 / 3e-47 AT5G54980 88 / 2e-23 Uncharacterised protein family (UPF0497) (.1) Potri.011G140200 [exp] 118 / 9e-34 AT1G17200 223 / 3e-74 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.001G436400 [exp] 109 / 5e-30 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.016G008800 [exp] 67 / 4e-14 AT2G35760 253 / 2e-86 Uncharacterised protein family (UPF0497) (.1) Potri.006G016900 [exp] 65 / 3e-13 AT2G35760 250 / 4e-85 Uncharacterised protein family (UPF0497) (.1) Potri.017G062100 [exp] 63 / 1e-12 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 57 / 1e-10 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1) Potri.015G103600 [exp] 55 / 9e-10 AT4G25040 90 / 9e-23 Uncharacterised protein family (UPF0497) (.1) Potri.001G323700 [exp] 53 / 5e-09 AT4G15620 75 / 8e-17 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034604 [exp] 216 / 2e-72 AT5G54980 176 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Lus10021788 [exp] 216 / 2e-72 AT5G54980 177 / 6e-57 Uncharacterised protein family (UPF0497) (.1) Lus10042471 [exp] 114 / 3e-32 AT1G17200 242 / 6e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10026196 [exp] 113 / 1e-31 AT1G17200 241 / 1e-81 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10038800 [exp] 74 / 2e-16 AT2G35760 243 / 2e-82 Uncharacterised protein family (UPF0497) (.1) Lus10039060 [exp] 71 / 3e-15 AT2G35760 242 / 5e-82 Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 50 / 6e-08 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10019999 [exp] 50 / 2e-07 AT4G25830 154 / 2e-47 Uncharacterised protein family (UPF0497) (.1) Lus10031998 [exp] 46 / 3e-06 AT4G15620 80 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Lus10032005 [exp] 45 / 4e-06 AT4G15620 65 / 1e-13 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.010G208300.1 pacid=42798670 polypeptide=Potri.010G208300.1.p locus=Potri.010G208300 ID=Potri.010G208300.1.v4.1 annot-version=v4.1 ATGCTCAAGCTCTTGGATTTTTCTCTTAGGCTCTCTGTTATTCCTCTTAGTGTTGCCACCATATGGTTAACTGTTACCAACAAGCAGGATAATAGCATCT ATGGTTATCTGAAATACAGCGATCTCACGGGACTCAAGTACATGGTTTTCATCAGTGGTATCTGTGCTAGCTATGCTTTTATTGCCGCTGTCTCCACATG GATCCGATGCATTGTTACTAAAACTTGGCTGTTCTTTGTCTCGGACCAGATTGTAGCTTACTTGATGGTTACATCCGGGACTGCAGTCTTAGAGATATTA TACTTGGCTTACAATGGTGATAGAGAAGTCTCATGGAGTGAAGCCTGCACTTCTTATGGGAAGTTTTGCTATAGAATGAAGCTGGCTGTGATTCTCCATG CTTTGGCTCTTTCCTGCTCTATTATTTTAGCTGTAATCTCGGCTTATAGAGCTTTTAGCATATTTGAACCTCCTCTTGTTCCTTCTAAAGTAGTTGAAGA AGATAGAGCTTAA
AA sequence Show only first row Show all	>Potri.010G208300.1 pacid=42798670 polypeptide=Potri.010G208300.1.p locus=Potri.010G208300 ID=Potri.010G208300.1.v4.1 annot-version=v4.1 MLKLLDFSLRLSVIPLSVATIWLTVTNKQDNSIYGYLKYSDLTGLKYMVFISGICASYAFIAAVSTWIRCIVTKTWLFFVSDQIVAYLMVTSGTAVLEIL YLAYNGDREVSWSEACTSYGKFCYRMKLAVILHALALSCSIILAVISAYRAFSIFEPPLVPSKVVEEDRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54980			Uncharacterised protein family...		Potri.010G208300 [exp]	0	1
AT5G64500			Major facilitator superfamily ...		Potri.009G081100 [exp]	4.47	0.6960
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Potri.013G053400 [exp]	5.83	0.7448	SIP1.3
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.003G181400 [exp]	6.63	0.7457	CCR.10,CCR7
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.005G043400 [exp]	11.22	0.6906
AT3G07570			Cytochrome b561/ferric reducta...		Potri.014G197500 [exp]	13.74	0.7055
AT1G47740			PPPDE putative thiol peptidase...		Potri.002G134200 [exp]	18.89	0.6442
AT3G21530			DNAse I-like superfamily prote...		Potri.008G198100 [exp]	19.59	0.7293
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Potri.001G118800 [exp]	23.87	0.7065
AT1G54460			TPX2 (targeting protein for Xk...		Potri.013G042800 [exp]	26.22	0.6790
AT4G36880		CP1	cysteine proteinase1 (.1)		Potri.005G141600 [exp]	27.87	0.6582

Compare expression of checked genes

Potri.010G208300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.