Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13680 1564 / 0 AtELP1, ELO2, ABO1 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G052400 [exp] 2283 / 0 AT5G13680 1547 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040306 [exp] 979 / 0 AT5G13680 880 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1) Lus10023427 [exp] 865 / 0 AT5G13680 781 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1) Lus10023426 [exp] 768 / 0 AT5G13680 645 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF04762 [poplar] [flax] IKI3 IKI3 family
Representative CDS sequence Show only first row Show all	>Potri.010G208400.1 pacid=42798466 polypeptide=Potri.010G208400.1.p locus=Potri.010G208400 ID=Potri.010G208400.1.v4.1 annot-version=v4.1 ATGAAAAACCTGAAGCTATACGGGGAGATTTCTCAGAATCTGGAATTACAATCGCCACAAGAAGTTATCCTCTTCTCCGCTTTCGATATCGAACGCAACC GCCTCTTCTTCGCTTCTTCGGCCAATATCATTTACACAGCTCACCTTTCTTCTTTCCAGAATGGAAAATCAAAAGGCTTGCTATTACCGTCGGAGATTAA TCAAATTGAATTGGAAGACGGAGACTTAATCACTGCATTTGATTACCTGATGGAGAAAGAAGCCTTAATTATTGGAACTGAAAATGGACTTTTATTATTG CATAATATTGATGATAATTCTACTGAAATCGTCGGTCAAGTTGAAGGCGGGGTTAAGTGTATCTCGCCGAGTCCCGATGGAGATTTGCTTGCTATTCTTA CTGGTTTCAGACAAGTGTTAGTTATGACTCATGATTGGGATTTGTTGTATGAAATCGCGGTTGAGGAGAAGGAAAATTACGGTGATGGTCTTGACGTACG TGAATTGGATGGAAAGAATATGTTTGGGAGTTTTATTTCATGGCGAGGTGATGGGAAATATTTTGCTACGATAAGTGAAGCGAGTGAATCTTCTGCCTTG CTTAAGAAGATTAAGGTTTGGGAACGGGATTCGGGTGCATTGCATTCCACGTCAGATTCTAAGGTATTTATGGGGGCGGTTTTGGAATGGATGCCAAGTG GAGCGAAAATTGCTGCTGTGTATGATAGAAAAGTGGAGAATAGGTGTCCTGATATTGCTTTCTATGAGAGGAATGGGTTGGTGAGGAGTTCTTTTAGTAT TAAAGAAGCAGTTGATGCAACAGTTGAAAGTCTTAAGTGGAATTGTGGTTCGGATCTTGTTGCATCTGTTGTTAGATGTGAGAAATATGATGCTGTTAAG CTCTGGTTTTTGAGCAACAACCATTGGTATTTGAAACATGAAGTTAGATACTCGAGACAGGATGGAGTTAGGCTCATGTGGGATCCAGTAAAGCCACTAC AGTTGATTTGTTGGACTTTTGGAGGCCAGATCACAATTTACAACTTCACCTGGATTTCTGCTGTGACAGAGAACTCGACAGCATTGGTCATTGATGACTC CAAAATACTTGTAACTCCACTTTCTTTATCCCTGATGCCACCTCCCCTTCATTTATTCAGCCTCAAATTTCCAAGTGCAGTGAGGGACCTGGCTTTATAT TCCAATAATTCTAAGAATAGAGTAGCTGCATTTTTATCAGATGGCTCTTTGGGTGTTGTAGAACTTCCTGACCCAGATACATGGGAGGATCTTGAAGAAA AAGAATTTACTGTTGAAGCTTCTATTTCTGAGACAGGTTTTGGATCCTTTGTGAACCTTGCATGGCTGGATTCACACATATTACTTGCTGTTTCTCATTA TGGCTTCTCTCATAGTAATTGTGCATCCCACAGTTCAATGGGCGAGGATGGACTTAGTGGTTTTTGTTTGCAGGAAATTGAACTTTTGTGTTCCGAGGAT CATGTACCAAGTTTGGTAACAGGATCAGGCTGGCATGCAAAGATTTCCCATAGAAATTATTTGGAAGGGCTTGTGATTGGCATTGCTCCTAATCCTGCCA AGAAACGTTCAGCTTTTGTTCAGTTTGACGGTGGAAATGTTGTTGAGTACACTTCAATGTTGGGCTTGGCTGTTACTGGAGGTTCAACAAAACATGATGA TATGAGCTTTTCATCATCTTGCCCTTGGATGAGTGTGGCTAAGGCCAGTGACAGTGGGTCATTAAAGCCCTTGCTTTTTGGTCTTGATGACATTGGGAGG CTGCATTTTGGTGGGAAAGTACTATGCAACAACTGCAGTAGTTTCTCATGCTACTCAAATTTGGCTGACCAAGTAGTCACTCATTTGATACTTTCAACCA AACAAGACTTTCTCTTTGTTGTGGAAATCGGTGATATACTGCATGGAGAAATAGAGTTAAAATACGAGAACTTTGTCCACACCGGTAACAGAAGAAAAGA AGAAAATATGAACTTCATAAATATTTGGGAAAGAGGTGCCAAAATTATTGGTGTCCTGCATGGTGATGATGCTGCTGTTATTATACAGACAACTCGGGGA AATCTGGAAAGCATTCACCCTAGAAAGCTGGTTCTTGCTTCAATTGTCAATGCTTTGATCCAAAGGCGTTTTAGGGATGCACTGCTGTTGGTCAGAAGGC ATAGAATAGATTTCAATGTTATCGTTGACTATTGTGGATGGCAAACTTTTCTTCAGTCAGCTTCAGAATTTGTCAAACAGGTTAACAATTTGAGCTATAT AACCGAGTTCATTTGTTCCATAAAGAATGAAAACATTATGGAAACCCTATACAAAAATTATATCTCTACACCCTGCCAAAACAGAGCTGGAGATGTTCAA GCTAAGGATGTCATGAGCTTTGATAGTTCCAGCAAGGTTTCTTCTCTCCTCCTGGCAATAAGGAAGGCTCTTGAGGAACAAGTCACCGAAAGCCCTGCAA GGGAGCTTTGCATTCTAACCACTCTAGCTCGCAGTGATCCTCCTATGCTCGAAGAAGCTTTGAAAAGAATCAAAGTTATTCGTGAAATGGAATTATTAGG TTCAAGTGACCCTAGGAGAAACTCTTATCCATCTGCTGAAGAAGCTCTGAAGCATCTGTTGTGGTTATCTGATTCCGATGCTGTATTTGAAGCTGCCTTA GGACTTTATGATTTGAACCTTGCAGCTATTGTGGCAGTGAACTCTCAAAGAGACCCAAAGGAATTTCTTCCTTATCTACAAGAATTAGAACGCATGCCAA GCCTCGTAATGTGCTACAATATTGACCTTCGGTTACACCGGTACGAGAAGGCTCTCAGACACATTGTTTCCGCTGGTGATGCATATTATTCAGATTGTAT GAACCTCATGAACAAAAATCCTCAATTATTTCCTCTTGGCCTTCAAATGATCACTGATCCTGCAAAGAAAATGCAGGTCCTTGAGGCCTGGGGCGATCAT CTTAGTGATGAAAAATGCTTTGAGGATGCCGCGATAACTTATCTGTGTTGTTCCAGTTTGGAAAATGCCTTGAAGGCATATCGCGCTTGTGGTGATTGGA GTGGGGTGCTTACTGTTGCTGGGCTCCTTAAACTGGAAAAGGACGAGTTAATGCAACTTGCTCATGATCTTTGTGAAGAGCTCCAAGCACTTGGTAAACC AGGAGAAGCTGCCAAAATTGCTCTGGAGTATTGTGGAGATGTTAACAGTGGGATTAATTTATTAATTAGTGCAAGGGACTGGGAGGAGGCTTTGAGGGTT GCTTTCATGCATAGGCAAGAGGATCTGGTATTGGAAGTGAAGAATGCAGCTTTAGATTGTGCAAGCACACTAATCAGTGAACACAAGGAAGGCTTGGAGA AGGTAGGGAAGTACTTGACTCGCTATTTAGCTGTTCGACAGAGAAGATTACTTCTGGCAGCAAAGCTTCAGTCAGAGGAACGGTCAATAAATGATCTGGA TGATGATACTGTTTCAGAAGCTAGCAGTAACTTCAGTGGCATGAGTGCCTACACCACAGGAACAAGGAAGGGCTCTGCTGCTTCTGTAACCTCCAGTGTC ACTAGCAAGGCAAGAGACATGAGGCGTCAGCGGAAGAGAGGAAAAATTCGCCCTGGCAGCCCTGATGAGGAGTTAGCACTGGTAGAGCATTTGAAAGGCA TGTCTCTAACAGCTGGAGCAAAGAATGAGCTTAGATCTTTATTGTTTACCCTTGTGAAGCTTGGTGGTGAAGAAATAGCAAGAAAGCTACAATTGGCTGG AGAGAATTTTCAACTTACTCAGATGGCAGCAGTCAAACTAGCAGAAGATACAATTTCTACTGATATCATAAATGAGAAGGCACACACTTTGGAGCATTAC ATTCGGAAAATGAGAAGTGAACTGCCAAATTTGGATTATTTTTCTTGGCGATCTAAAGTTTTCATTTCTCCTTGA
AA sequence Show only first row Show all	>Potri.010G208400.1 pacid=42798466 polypeptide=Potri.010G208400.1.p locus=Potri.010G208400 ID=Potri.010G208400.1.v4.1 annot-version=v4.1 MKNLKLYGEISQNLELQSPQEVILFSAFDIERNRLFFASSANIIYTAHLSSFQNGKSKGLLLPSEINQIELEDGDLITAFDYLMEKEALIIGTENGLLLL HNIDDNSTEIVGQVEGGVKCISPSPDGDLLAILTGFRQVLVMTHDWDLLYEIAVEEKENYGDGLDVRELDGKNMFGSFISWRGDGKYFATISEASESSAL LKKIKVWERDSGALHSTSDSKVFMGAVLEWMPSGAKIAAVYDRKVENRCPDIAFYERNGLVRSSFSIKEAVDATVESLKWNCGSDLVASVVRCEKYDAVK LWFLSNNHWYLKHEVRYSRQDGVRLMWDPVKPLQLICWTFGGQITIYNFTWISAVTENSTALVIDDSKILVTPLSLSLMPPPLHLFSLKFPSAVRDLALY SNNSKNRVAAFLSDGSLGVVELPDPDTWEDLEEKEFTVEASISETGFGSFVNLAWLDSHILLAVSHYGFSHSNCASHSSMGEDGLSGFCLQEIELLCSED HVPSLVTGSGWHAKISHRNYLEGLVIGIAPNPAKKRSAFVQFDGGNVVEYTSMLGLAVTGGSTKHDDMSFSSSCPWMSVAKASDSGSLKPLLFGLDDIGR LHFGGKVLCNNCSSFSCYSNLADQVVTHLILSTKQDFLFVVEIGDILHGEIELKYENFVHTGNRRKEENMNFINIWERGAKIIGVLHGDDAAVIIQTTRG NLESIHPRKLVLASIVNALIQRRFRDALLLVRRHRIDFNVIVDYCGWQTFLQSASEFVKQVNNLSYITEFICSIKNENIMETLYKNYISTPCQNRAGDVQ AKDVMSFDSSSKVSSLLLAIRKALEEQVTESPARELCILTTLARSDPPMLEEALKRIKVIREMELLGSSDPRRNSYPSAEEALKHLLWLSDSDAVFEAAL GLYDLNLAAIVAVNSQRDPKEFLPYLQELERMPSLVMCYNIDLRLHRYEKALRHIVSAGDAYYSDCMNLMNKNPQLFPLGLQMITDPAKKMQVLEAWGDH LSDEKCFEDAAITYLCCSSLENALKAYRACGDWSGVLTVAGLLKLEKDELMQLAHDLCEELQALGKPGEAAKIALEYCGDVNSGINLLISARDWEEALRV AFMHRQEDLVLEVKNAALDCASTLISEHKEGLEKVGKYLTRYLAVRQRRLLLAAKLQSEERSINDLDDDTVSEASSNFSGMSAYTTGTRKGSAASVTSSV TSKARDMRRQRKRGKIRPGSPDEELALVEHLKGMSLTAGAKNELRSLLFTLVKLGGEEIARKLQLAGENFQLTQMAAVKLAEDTISTDIINEKAHTLEHY IRKMRSELPNLDYFSWRSKVFISP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Potri.010G208400 [exp]	0	1
AT5G17270			Protein prenylyltransferase su...		Potri.004G080800 [exp]	1.41	0.8681
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	3.16	0.8877
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.001G243400 [exp]	4.24	0.8547
AT4G21660			proline-rich spliceosome-assoc...		Potri.011G047600 [exp]	6.48	0.7634
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.008G112800 [exp]	6.48	0.8268
AT5G51300			splicing factor-related (.1.2....		Potri.003G107200 [exp]	7.07	0.8297
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	8.00	0.8506
AT1G10490			Domain of unknown function (DU...		Potri.007G079300 [exp]	9.16	0.8289
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.002G213500 [exp]	15.96	0.7846
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Potri.003G060500 [exp]	17.23	0.8195

Compare expression of checked genes

Potri.010G208400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.