Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27660 90 / 3e-20 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31730 71 / 3e-15 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 72 / 9e-15 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G05170 71 / 2e-14 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G21340 71 / 5e-14 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G20640 71 / 1e-13 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 66 / 2e-13 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G31050 69 / 5e-13 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 64 / 2e-11 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G20100 63 / 3e-11 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G052000 [exp] 394 / 2e-139 AT1G27660 90 / 5e-20 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G230800 [exp] 88 / 1e-19 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G032400 [exp] 83 / 7e-18 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 79 / 1e-16 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.010G098900 [exp] 79 / 1e-16 AT1G31050 209 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G020200 [exp] 77 / 4e-16 AT1G27660 155 / 8e-43 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G033000 [exp] 77 / 5e-16 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.005G119601 [exp] 77 / 5e-16 AT1G27660 145 / 2e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G410600 [exp] 77 / 6e-16 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029460 [exp] 104 / 9e-27 AT3G20640 71 / 3e-15 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005959 [exp] 101 / 2e-25 AT4G21340 80 / 2e-17 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023428 [exp] 86 / 6e-19 AT5G59890 244 / 4e-81 actin depolymerizing factor 4 (.1.2) Lus10010638 [exp] 85 / 1e-18 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 76 / 1e-15 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 74 / 5e-15 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10014279 [exp] 74 / 9e-15 AT5G44230 374 / 5e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038550 [exp] 74 / 1e-14 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013874 [exp] 72 / 3e-14 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025599 [exp] 66 / 2e-13 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G208600.4 pacid=42799939 polypeptide=Potri.010G208600.4.p locus=Potri.010G208600 ID=Potri.010G208600.4.v4.1 annot-version=v4.1 ATGCTCTTCTTCCACCAGTATCTTCACACCTTTACAACTTCGGTTCAGAGGCCAAATCTGGAAGTCTCTATGTCAATGGATGCCAAAATCAAAAATGTCC ATGGTACTAGCTTTTATTTGGACTCCAAAGTCTTCAATGATGGCCACCAGCTACGAGATGGAGGCTTCTGTATTCCTTATCAATCCCTTGCTAGCTATCA ACCAGTGGCAGGCTATCAATCTGTATCCTCTACCTGCAGCAACATCCCACAGCAGTCAATGCTATTGAGCAAGGGAGTCTCTATTACAGAGGTTCAAATG GACTTTCAGGCCATGCAAATGAGGAAAAGGTCAATTGATGAGCTTACAAACCTACTACCCCAAAGAGAACCTAGCGATCTCATTGAAAACAAGACTGCTT TGAGTACATGGAAGACTAATAAGAGAAAGAAGGCTAATTCCCCTGAAGAACCATGGAATCACCAAGCCAGAGAATCAATCAGCATCCAAGAGCAAAAGTT GCAGGTGCCTGTGAGGAGAAGCCAAAAGCTGAGTGACAAAATCACAGCTCTTCAAAAGTTGGTCTCTCCATATGGCAAGGCAGACACTGCCTCTGTTCTA CTAGAGGCTTCTCTTCACATCAAGCTCCTTCAAGAGCAAATCCAGAATCTGTTTCAGATGCTGACAAGCTCACGCAATAGTACAAGACCTATTCAACAGT CACAGGAAGCTGATGGTGAACTGCGAGACCTACAAAGTAGAGGACTTTGCTTGGTTCCCAGATCGTTTATGCTGAAAAATGACTCAGCAGCCAGACCAAG TTGA
AA sequence Show only first row Show all	>Potri.010G208600.4 pacid=42799939 polypeptide=Potri.010G208600.4.p locus=Potri.010G208600 ID=Potri.010G208600.4.v4.1 annot-version=v4.1 MLFFHQYLHTFTTSVQRPNLEVSMSMDAKIKNVHGTSFYLDSKVFNDGHQLRDGGFCIPYQSLASYQPVAGYQSVSSTCSNIPQQSMLLSKGVSITEVQM DFQAMQMRKRSIDELTNLLPQREPSDLIENKTALSTWKTNKRKKANSPEEPWNHQARESISIQEQKLQVPVRRSQKLSDKITALQKLVSPYGKADTASVL LEASLHIKLLQEQIQNLFQMLTSSRNSTRPIQQSQEADGELRDLQSRGLCLVPRSFMLKNDSAARPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.010G208600 [exp]	0	1
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085800 [exp]	1.00	0.9393	Pt-CYP71.2
AT4G27590			Heavy metal transport/detoxifi...		Potri.015G003800 [exp]	2.00	0.9350
AT1G65920			Regulator of chromosome conden...		Potri.004G080900 [exp]	2.82	0.9124
					Potri.006G037900 [exp]	2.82	0.8831
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Potri.006G023700 [exp]	3.16	0.9096
AT1G60010			unknown protein		Potri.010G095400 [exp]	3.46	0.8938
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.011G114500 [exp]	4.24	0.9201
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.006G214700 [exp]	9.79	0.8695
AT2G39980			HXXXD-type acyl-transferase fa...		Potri.008G065000 [exp]	10.00	0.8340
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.017G016900 [exp]	12.16	0.8131

Compare expression of checked genes

Potri.010G208600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.