Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55340 265 / 2e-82 PHIP1 phragmoplastin interacting protein 1 (.1) AT4G24770 83 / 2e-17 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 79 / 5e-16 CP31B chloroplast RNA-binding protein 31B (.1) AT1G60000 75 / 7e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 70 / 5e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G16940 69 / 2e-12 Splicing factor, CC1-like (.1.2.3) AT3G18610 69 / 3e-12 ATNUC-L2, PARLL1, ATRANGAP1 PARALLEL1-LIKE 1, nucleolin like 2 (.1) AT5G19350 67 / 5e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G49390 67 / 6e-12 CID10 CTC-interacting domain 10 (.1.2) AT1G53650 66 / 8e-12 CID8 CTC-interacting domain 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090200 [exp] 84 / 2e-17 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G141300 [exp] 76 / 5e-15 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G086500 [exp] 75 / 1e-14 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 74 / 1e-14 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.009G065900 [exp] 71 / 9e-14 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G172100 [exp] 71 / 1e-13 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G137200 [exp] 71 / 4e-13 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.007G009800 [exp] 70 / 1e-12 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.004G177000 [exp] 70 / 1e-12 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003287 [exp] 368 / 1e-122 AT3G55340 291 / 6e-91 phragmoplastin interacting protein 1 (.1) Lus10030327 [exp] 365 / 3e-121 AT3G55340 275 / 9e-85 phragmoplastin interacting protein 1 (.1) Lus10017026 [exp] 87 / 3e-18 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017403 [exp] 81 / 1e-15 AT3G18610 216 / 5e-59 PARALLEL1-LIKE 1, nucleolin like 2 (.1) Lus10002222 [exp] 77 / 2e-15 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10029372 [exp] 77 / 4e-15 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10023191 [exp] 76 / 4e-15 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10010202 [exp] 77 / 8e-15 AT3G18610 218 / 9e-60 PARALLEL1-LIKE 1, nucleolin like 2 (.1) Lus10035678 [exp] 73 / 5e-14 AT2G35410 231 / 2e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10037265 [exp] 73 / 5e-14 AT2G35410 234 / 1e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Potri.010G209701.1 pacid=42797909 polypeptide=Potri.010G209701.1.p locus=Potri.010G209701 ID=Potri.010G209701.1.v4.1 annot-version=v4.1 ATGGTGTTATCAAACAAGAAGCTAAAGCAGAAGCTGAGAGCTGTGAAGGCTGAGGCTTTAGTATCCAAAGTGTCTAATGGACCCGAACGAGATAGCAAAA ACGGATCTTTAGGAAACCCAGAGTCGAACTCGCAGCTTCAAGAGCTTCTAGAGGCAGCAAAACAGAGACAAAGATTGTCAAAGAGAGAACAAAGAAGAAA GACTCAATCGTTACAAGGGATTGATAGTGAAAACAAGAGCCAAGCTGGTGATAATGGTGAAGAGGACAAGAAAGTTGAAGACATAAGGGAAGGGGATTTG TTAGTGGGTGAGGACGGTGATGGTGAAAGTAGTGAAAAGAAGATAAAGACGAAGAAGAGGAAGAGAAAGAGGGAGGAGGGAGAGAGTGAAAAGAAGGGTT TAGAGGAAGACGTAGAAGTGAAGGAGGCAAAGAAGGCGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACTAAGAAGAAGACGAAGGCAAAAACTGA GGAGGAGAAGGCCGGTGGTGAGGCAGAAGGGGTTGTAGAGGCAGCAAAAGTGGCCGGAGAAAGTAAAATAAGTGAGGATATTGCTGACAGAGTTTATGTC GGAGGCATTCCATACTATTCGACTGAGGATGACATTCGTAGTTTCTTCGAAGGCTGTGGTACCATAACCGAAGTTGATTGTATGACATTTCCTGACAGTG GGAAGTTTAGGGGAATTGCCATCATTAGTTTCAAGACTGAAGCTGCTGCCAAACGAGCCTTGGATCTTGATGGATCTGACATGGGCGGGTTTTATCTGAA AATTCAGCCTTACAAGACAACTAAAGTCAACAAGGAACCCAATTTTGCACCAGGAATTGTGGAGGGTTACAACAGGATCTATGTTGGAAATTTGTCTTGG GATATAACTGAAGATGACCTGAAGAAATTTTTCTCAGATTGCAAAATATCATCTATACGTTTTGGTATGGACAAGGAAACAGGGGAATTCCGTGGTTATG GCCATGTTGATTTTTCTGACAATGACTCGCTGGTGAAGGCACTAAAGTTGGACCAGCGGATTGTCTGCGGGAGACCCATCAAGATAAGCTGTGCGGTTCC AAAGAAGGGAGGAAAACTCCAGGAAAACCAAAATCAAATAGTTGAAGAAGCAAAAATTCAATCAACTGCTATGCCTATGATTACAAGTGATGAAGTTAAT AACGGTGTGCCAAGCATTAGCAGTGGTAAGATTAAGAGGAGGACCTGCTATGAGTGTGGTGAAAAGGGGCATATTTCTACGGCTTGCCCAAAGAAGCTAA CTGCTGATCCAACAGATTCCAATACAAGTTAA
AA sequence Show only first row Show all	>Potri.010G209701.1 pacid=42797909 polypeptide=Potri.010G209701.1.p locus=Potri.010G209701 ID=Potri.010G209701.1.v4.1 annot-version=v4.1 MVLSNKKLKQKLRAVKAEALVSKVSNGPERDSKNGSLGNPESNSQLQELLEAAKQRQRLSKREQRRKTQSLQGIDSENKSQAGDNGEEDKKVEDIREGDL LVGEDGDGESSEKKIKTKKRKRKREEGESEKKGLEEDVEVKEAKKAKKKKKKKKKKKTKKKTKAKTEEEKAGGEAEGVVEAAKVAGESKISEDIADRVYV GGIPYYSTEDDIRSFFEGCGTITEVDCMTFPDSGKFRGIAIISFKTEAAAKRALDLDGSDMGGFYLKIQPYKTTKVNKEPNFAPGIVEGYNRIYVGNLSW DITEDDLKKFFSDCKISSIRFGMDKETGEFRGYGHVDFSDNDSLVKALKLDQRIVCGRPIKISCAVPKKGGKLQENQNQIVEEAKIQSTAMPMITSDEVN NGVPSISSGKIKRRTCYECGEKGHISTACPKKLTADPTDSNTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55340		PHIP1	phragmoplastin interacting pro...		Potri.010G209701 [exp]	0	1
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Potri.003G098800 [exp]	1.41	0.8909
AT3G01160			unknown protein		Potri.005G108800 [exp]	1.73	0.8693
AT3G18600			P-loop containing nucleoside t...		Potri.001G250700 [exp]	2.82	0.8199
AT4G01560		MEE49	maternal effect embryo arrest ...		Potri.014G108400 [exp]	3.74	0.8241
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Potri.013G145300 [exp]	4.89	0.8483
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.004G108000 [exp]	5.19	0.8186
AT3G02760			Class II aaRS and biotin synth...		Potri.019G071400 [exp]	5.91	0.8334
AT4G38710			glycine-rich protein (.1.2)		Potri.009G130200 [exp]	6.48	0.7890
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.017G108100 [exp]	6.92	0.7757
AT1G69070			unknown protein		Potri.010G140100 [exp]	7.07	0.8182

Compare expression of checked genes

Potri.010G209701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.