Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55330 299 / 2e-103 PPL1 PsbP-like protein 1 (.1) AT2G39470 140 / 5e-41 PnsL1, PPL2 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) AT3G05410 58 / 1e-09 Photosystem II reaction center PsbP family protein (.1.2) AT4G15510 57 / 2e-09 Photosystem II reaction center PsbP family protein (.1.2.3) AT1G06680 48 / 2e-06 PSII-P, OEE2, PSBP-1, OE23 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) AT5G11450 46 / 8e-06 PPD5 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G050300 [exp] 248 / 1e-83 AT3G55330 164 / 8e-51 PsbP-like protein 1 (.1) Potri.010G210000 [exp] 139 / 1e-40 AT2G39470 278 / 3e-95 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Potri.005G010700 [exp] 62 / 3e-11 AT4G15510 319 / 4e-110 Photosystem II reaction center PsbP family protein (.1.2.3) Potri.013G006500 [exp] 61 / 9e-11 AT4G15510 306 / 5e-105 Photosystem II reaction center PsbP family protein (.1.2.3) Potri.005G206700 [exp] 45 / 1e-05 AT1G06680 400 / 2e-142 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030326 [exp] 333 / 3e-116 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1) Lus10003289 [exp] 331 / 1e-115 AT3G55330 267 / 7e-91 PsbP-like protein 1 (.1) Lus10023436 [exp] 148 / 5e-44 AT2G39470 255 / 3e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Lus10040314 [exp] 147 / 9e-44 AT2G39470 254 / 5e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Lus10000352 [exp] 61 / 1e-10 AT4G15510 309 / 4e-106 Photosystem II reaction center PsbP family protein (.1.2.3) Lus10000614 [exp] 59 / 2e-10 AT4G15510 308 / 9e-106 Photosystem II reaction center PsbP family protein (.1.2.3) Lus10039615 [exp] 51 / 3e-07 AT2G28605 226 / 7e-74 Photosystem II reaction center PsbP family protein (.1) Lus10029532 [exp] 48 / 3e-06 AT2G28605 248 / 4e-83 Photosystem II reaction center PsbP family protein (.1) Lus10029903 [exp] 46 / 1e-05 AT3G05410 286 / 2e-97 Photosystem II reaction center PsbP family protein (.1.2) Lus10018931 [exp] 40 / 0.001 AT1G77090 359 / 1e-126 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [poplar] [flax] Mog1p_PsbP PF01789 [poplar] [flax] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Potri.010G210200.2 pacid=42799357 polypeptide=Potri.010G210200.2.p locus=Potri.010G210200 ID=Potri.010G210200.2.v4.1 annot-version=v4.1 ATGGCTTCTTTACAAAACTCACCCTCAGTTTATCATACATTATCTCCATATTCTCTCCCTCAGGTCGGAGGAGCACAAAAGAATCATGGAATGTTGTCTT TCTGTAGAAGAGGCCTTTCTTTTCTTGTTAGGGCCGAGCAATCATCACCAAATTCAACTTCTCTTTCTCAAGTTAGATTTGGGAGACGTGAATTGATAGC AGTGAGTGTCATTGCACCTTGGGTATCCATGGTTAACCAAACTCCTCCATCATTTGCTGCAGAATCTAAAAAGGGATTTCTTTTAGTCACGGACAAGAAG GATGGATACTCATTTCTCTACCCATTTGGGTGGCAGGAAGTTGTCATCGAAGGACAAGACAAGGTCTTTAAAGATGTCATCGAGCCCTTAGAAAGTATCA GTGTGAATGTGATCCCTACCGTCAAACAAGATATTCGAGACTTTGGACCTCCACAACAGGTTGCTGAAACATTGATAAAAAAGGTTTTGGCCCCTCCTTC ACAGAAAACAAAACTAATTGAGGCAAAAGAGCACGGTGCTGATGGGAAAATTTATTACACATTTGAGTTCGTTGCTCAGGCTCCAAATTTTACCCGCCAT GCTCTTAGTGCAATCGCTATTGGCAATGGTAAATTCTACACTTTGACAACGGGAGCCAATGAACGAAGGTGGGAGAAGATGAAGGATAAATTGCAGATGG TCATTGATTCCTTCGAAATTTTCAATGTTTGA
AA sequence Show only first row Show all	>Potri.010G210200.2 pacid=42799357 polypeptide=Potri.010G210200.2.p locus=Potri.010G210200 ID=Potri.010G210200.2.v4.1 annot-version=v4.1 MASLQNSPSVYHTLSPYSLPQVGGAQKNHGMLSFCRRGLSFLVRAEQSSPNSTSLSQVRFGRRELIAVSVIAPWVSMVNQTPPSFAAESKKGFLLVTDKK DGYSFLYPFGWQEVVIEGQDKVFKDVIEPLESISVNVIPTVKQDIRDFGPPQQVAETLIKKVLAPPSQKTKLIEAKEHGADGKIYYTFEFVAQAPNFTRH ALSAIAIGNGKFYTLTTGANERRWEKMKDKLQMVIDSFEIFNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Potri.010G210200 [exp]	0	1
AT4G01150			unknown protein		Potri.002G166800 [exp]	1.41	0.9876	CAM2.2
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Potri.006G139600 [exp]	1.41	0.9881	Lhca6,Pt-LHCA2*1.1
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Potri.006G221100 [exp]	2.82	0.9838
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Potri.019G087300 [exp]	3.00	0.9846
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Potri.002G185200 [exp]	3.74	0.9770	ROC4.1
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Potri.006G221900 [exp]	4.89	0.9780
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Potri.005G079700 [exp]	6.00	0.9745
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Potri.002G253800 [exp]	7.41	0.9796	PSAE1.1
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.017G118900 [exp]	8.12	0.9728
AT3G47860		CHL	chloroplastic lipocalin (.1)		Potri.001G420800 [exp]	9.74	0.9695

Compare expression of checked genes

Potri.010G210200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.