Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210800 [exp] 223 / 4e-74 AT3G09110 86 / 2e-19 Protein of unknown function (DUF674) (.1) Potri.010G210600 [exp] 196 / 2e-64 ND / Potri.008G050100 [exp] 186 / 3e-60 ND / Potri.010G210500 [exp] 181 / 4e-58 AT3G09110 73 / 4e-15 Protein of unknown function (DUF674) (.1) Potri.008G050000 [exp] 129 / 1e-37 AT3G09110 94 / 1e-22 Protein of unknown function (DUF674) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003167 [exp] 91 / 2e-22 AT3G09140 100 / 5e-25 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2) Lus10003168 [exp] 90 / 5e-22 AT5G01150 94 / 2e-22 Protein of unknown function (DUF674) (.1) Lus10003163 [exp] 90 / 6e-22 AT3G09110 100 / 2e-24 Protein of unknown function (DUF674) (.1) Lus10003166 [exp] 86 / 2e-20 AT3G09110 104 / 3e-26 Protein of unknown function (DUF674) (.1) Lus10003164 [exp] 82 / 2e-19 AT5G01130 95 / 6e-23 Protein of unknown function (DUF674) (.1) Lus10011225 [exp] 68 / 6e-14 AT5G01150 89 / 4e-20 Protein of unknown function (DUF674) (.1) Lus10002340 [exp] 53 / 3e-09 AT5G01150 47 / 4e-07 Protein of unknown function (DUF674) (.1) Lus10008717 [exp] 40 / 0.0002 AT2G40070 52 / 5e-09 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05056 [poplar] [flax] DUF674 Protein of unknown function (DUF674)
Representative CDS sequence Show only first row Show all	>Potri.010G210400.1 pacid=42799814 polypeptide=Potri.010G210400.1.p locus=Potri.010G210400 ID=Potri.010G210400.1.v4.1 annot-version=v4.1 ATGATTGGCTGCATATCAAGTCTTTATGGGAGCCTCGAAAAGCTGGATGAATCGTACCTGCAGCATAACCAAAACAAGGGTTCCCTTTTGAAACCAACTA TAACAACCCAGGTCACCAATCCAAATTTCTTGCTTCCTGACACTAAAAACCCTGAAAACCGGAAGTTATACTATTGCTCAAGCCATCCAGGGTACGTGTC AGATATTCATAACTCTGTTTGTAGTCATTGCAGATCACAAGGCTATGGTAATCCCTGTTATCTCAGTGAAGAAGTTAAGTTTGCTGACATGAATGATTCC ACTTCCACAGATACGCCAACCAGTGACCAGGGAGGTTACGTGAAGGGCCTGGTCACTTACATGGTGACAGGTGATTTGTCCGTCTCTCCAATGTCAATGG TGTCTGGTGTTGGTATGCTAAACAAGTTCAATATCAAGGATTTTGGTGTTCTTGAGGAGAAAGTTGTTGAATTTGGGATCAATGAGGGTCTTGAATTGTT GAAAGCTTCTCTTTTGTCGAAGGATGCTCTCTCTGCTGTTTTCCTTCCAAAGCTGAATTAA
AA sequence Show only first row Show all	>Potri.010G210400.1 pacid=42799814 polypeptide=Potri.010G210400.1.p locus=Potri.010G210400 ID=Potri.010G210400.1.v4.1 annot-version=v4.1 MIGCISSLYGSLEKLDESYLQHNQNKGSLLKPTITTQVTNPNFLLPDTKNPENRKLYYCSSHPGYVSDIHNSVCSHCRSQGYGNPCYLSEEVKFADMNDS TSTDTPTSDQGGYVKGLVTYMVTGDLSVSPMSMVSGVGMLNKFNIKDFGVLEEKVVEFGINEGLELLKASLLSKDALSAVFLPKLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.010G210400 [exp]	0	1
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.003G134500 [exp]	2.23	0.7503
AT3G09110			Protein of unknown function (D...		Potri.010G210800 [exp]	3.16	0.7627
AT3G26935			DHHC-type zinc finger family p...		Potri.012G103300 [exp]	4.89	0.7306
AT5G27690			Heavy metal transport/detoxifi...		Potri.013G017700 [exp]	6.24	0.7544
AT1G26780	MYB	LOF1, ATMYB117	LATERAL ORGAN FUSION 1, myb do...		Potri.019G040900 [exp]	8.12	0.7439
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.003G167100 [exp]	11.40	0.7395
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.018G096000 [exp]	13.26	0.7528
AT4G35160			O-methyltransferase family pro...		Potri.013G121400 [exp]	15.09	0.7101	Pt-OOMT2.15
AT1G13570			F-box/RNI-like superfamily pro...		Potri.014G039700 [exp]	17.66	0.7265
					Potri.014G013200 [exp]	19.36	0.7005

Compare expression of checked genes

Potri.010G210400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.