Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55270 715 / 0 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT3G06110 100 / 2e-24 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT3G23610 98 / 5e-23 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT5G23720 86 / 5e-17 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT2G04550 68 / 3e-12 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) AT3G01510 48 / 3e-05 LSF1 like SEX4 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049900 [exp] 923 / 0 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.010G033000 [exp] 93 / 2e-21 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.012G105800 [exp] 88 / 1e-17 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.015G105000 [exp] 87 / 4e-17 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.014G160500 [exp] 66 / 1e-11 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Potri.006G040300 [exp] 58 / 1e-08 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.016G035700 [exp] 58 / 2e-08 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.001G349000 [exp] 44 / 0.0004 AT3G01510 775 / 0.0 like SEX4 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003291 [exp] 806 / 0 AT3G55270 800 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10030324 [exp] 801 / 0 AT3G55270 806 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10006229 [exp] 533 / 7e-179 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10036877 [exp] 530 / 1e-177 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10021940 [exp] 97 / 7e-23 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 83 / 1e-18 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 85 / 2e-18 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10032545 [exp] 89 / 1e-17 AT5G23720 1120 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10043195 [exp] 87 / 4e-17 AT5G23720 1047 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10000921 [exp] 71 / 5e-13 AT2G04550 322 / 1e-111 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.010G210900.1 pacid=42798625 polypeptide=Potri.010G210900.1.p locus=Potri.010G210900 ID=Potri.010G210900.1.v4.1 annot-version=v4.1 ATGGTGGACAAAGAAGACGCCTCTAATAATCCTCTGGCTCCATGCCAGCTTCCTTCTGCTGGTGGGTCCCGCAAGGTGTTCTGGCGTTCTGTGTCCTGGT CCTCTTCCAGGACTGCCTCACAAAACCCTGGAACAGAAGAGCAAGATCGTGTTATAGATCCGAACGGGAATCCTGCTGGTAATAACAGCGGTAGTGGGCA AAACCGGAGGTATCCTGCTCCGTTAACCCCACGGTCCCAACAGAACAGTAAAGCACGGTCTTGCTTGCCACCTTTGCAGCCGTTGTCGATTGCTCGGAGA AGTGTAGACGAGTGGCCAAAAGCTAGTTCTGATGATCTGGGAGAGTGGCCACAACCGCCTACACCTAGTGGGAACAAGAGTGGTGAAAGGTTGAAACTTG ATTTGTCCTCGATTCAAAGGAACCCGGATAGGAATGTTGGGTTGGTGAAGAAGGATAGAATTGCTTTCTTTGGTAAGGAATGCTCAAAAGTTGCTGAACA TGTGTATCTTGGTGGGGATGCTGTTGCTAGAGAGAGGGAAATTTTGAAGCAGAATGGGATTACTCATGTGTTAAATTGTGTGGGTTTTGTTTGTCCAGAG TATTTCAAGGCTGATTTTGTTTATAGGACTCTGTGGTTGCAGGATAGTCCATCAGAGGATATAACAAGTATTCTATATGATGTTTTCGATTATTTTGAAG ATGTCAGGGAACAGGGTGGGAGGGTTTTTGTTCATTGTTGCCAAGGGGTTTCACGGTCCACTTCATTGGTGATAGCGTATCTTATGTGGAGAGAGGGCCA GAGTTTTGATGATGCATTTCAATATGTGAAGGCAGCGAGAGGGATTGCAGATCCCAATATGGGTTTTGCTTGCCAGTTATTACAGTGCCAAAAGAGGGTT CATGCTTTCCCTCTTAGCCCTAGTTCTCTTTTGAGGATGTATAGAATCGCTCCACACTCACCCTATGACCCTTTGCATCTTGTCCCAAGGATGCTGAATG ATCCTTCACTATCTGCTCTGGATTCTAGAGGTGCCTTTATTGTTCATATACCTTCTTCAATATATGTCTGGATAGGTAAAAATTGCGAGGCTATCATGGA AAGGGATGCGAGAGGGGCAGTTTGCCAGATTGTTAGGTACGAAAGAGCTCTAGGACCAATAATAGTGGTTAAAGAAGGTGAAGAACCAGCTTACTTTTGG GATGCTTTCTCTTATTATTTACCTTTGATGGATAAATCTGCTAATGGAGGAGATAGTGGGGAATCCAGAACTAAGATTTTCCCTGGTGAGAGGAAAGTGG ATGCATATAATGTTGATTTTGAGATTTTCCAAAAAGCCATCAAGGGGGGTTTTGTGCCTCCATTTGCGACATCAGAGAATGAACATGAAACCCATCTTCC TGCTAGAGAAAGCAGTTGGAGTGTGCTAAGGCGGAAGTTTGCCCCTGGTGACATGAAGGAGTTTGTCTCAGCACCGAAGATATTCCTTTCCAGGGTCTAT TCAGACTCTATGATGATAGTGCACTCACCATCACCTTCTTCATCATCGCCATCATCATCTTCATCCTCTTCACCTCTGTATCTCTCTCCAGACTCTATCT CTTCTGATTCGAGCTCTAGCTCAAAGTACTTTTCAGAATCTTCGCAAGATTCTCCTTCAGCAGCATCATGTTCTCTTCCAGTATCGTCAACGTTGTCTAA TTTATCTAACTTGTCTCTCACATCTAAATCTTCTTCCCAACCATTATCGAACACTCCTAGATTTCATGGTGTCAGCATGTCCCGGCAATGTTCGCTGGCA GCTTCCTCACCGTCCAAAAAATATTCAATTTCACTTGCCGAGCGCAGAGGTAGCTTGTCCAAGTCTTTGAAGCTGCCAACAGTGACTGATAATACAAGGG TGAGCAATACACCTCCAAGTTCTCTTGCCAGCCATGAAGAGGGTGCCAGGATAAACGAGAAAACCTTCTCTTGGTGTGATTCAGATAGTTTAGACATTGT TTTTGAGTCCAAGGATAATGTTAAAAAAGGTAGACATTCAATTCAACAGTGCATGCCGAACATATCTCTGGATAGAGTAGCTAGTTCTGACTTACAGCAC AGTGAAGCCTCCATTGTAAATAATTTTGATGAACTGGGTAAAAATTGCCATGTCGAAGAAGGCTCAGGTTGTTCCATGTTGAATGGGATGGAGGAAAGTG TTGCTCTAAGTCATAACATAATGCAACCTCTGGTATGCCGCTGGCCCAGTTTAGAAAGGATTGCAGCATTGGGTACCGGTGATTTGGATTCTAAATCAGC CTTTGTCATTTTAGTGCCATCCAGAGGTATAGGCAGATGTGAGACTAGGATTCTATACTTTTGGGTAGGAAAATCTTTTTCTGATGAGAAAGGCCTGATT CAGTTAGATAGCGGCAGACTATTAGCAGATTCTGAACATATTGACTGGAGTCAAGCTGGTCATCGTGTTCTAACTCAAATGCATCTTCGGAAGGACGTCA CCGTTAAGGTGGTCAAAGAAGATGAAGAACCAGCAGAATTTCTTGCATTGTTGAGTGCATTGTAA
AA sequence Show only first row Show all	>Potri.010G210900.1 pacid=42798625 polypeptide=Potri.010G210900.1.p locus=Potri.010G210900 ID=Potri.010G210900.1.v4.1 annot-version=v4.1 MVDKEDASNNPLAPCQLPSAGGSRKVFWRSVSWSSSRTASQNPGTEEQDRVIDPNGNPAGNNSGSGQNRRYPAPLTPRSQQNSKARSCLPPLQPLSIARR SVDEWPKASSDDLGEWPQPPTPSGNKSGERLKLDLSSIQRNPDRNVGLVKKDRIAFFGKECSKVAEHVYLGGDAVAREREILKQNGITHVLNCVGFVCPE YFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRV HAFPLSPSSLLRMYRIAPHSPYDPLHLVPRMLNDPSLSALDSRGAFIVHIPSSIYVWIGKNCEAIMERDARGAVCQIVRYERALGPIIVVKEGEEPAYFW DAFSYYLPLMDKSANGGDSGESRTKIFPGERKVDAYNVDFEIFQKAIKGGFVPPFATSENEHETHLPARESSWSVLRRKFAPGDMKEFVSAPKIFLSRVY SDSMMIVHSPSPSSSSPSSSSSSSPLYLSPDSISSDSSSSSKYFSESSQDSPSAASCSLPVSSTLSNLSNLSLTSKSSSQPLSNTPRFHGVSMSRQCSLA ASSPSKKYSISLAERRGSLSKSLKLPTVTDNTRVSNTPPSSLASHEEGARINEKTFSWCDSDSLDIVFESKDNVKKGRHSIQQCMPNISLDRVASSDLQH SEASIVNNFDELGKNCHVEEGSGCSMLNGMEESVALSHNIMQPLVCRWPSLERIAALGTGDLDSKSAFVILVPSRGIGRCETRILYFWVGKSFSDEKGLI QLDSGRLLADSEHIDWSQAGHRVLTQMHLRKDVTVKVVKEDEEPAEFLALLSAL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.010G210900 [exp]	0	1
AT4G14200			Pentatricopeptide repeat (PPR)...		Potri.002G235900 [exp]	1.73	0.9010
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.013G008300 [exp]	2.23	0.8938
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Potri.009G054600 [exp]	3.16	0.9036
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Potri.015G136700 [exp]	6.48	0.9100	Pt-NAP8.1
AT1G10940		ASK1, SNRK2-4, ...	SNF1-related protein kinase 2....		Potri.004G138300 [exp]	7.48	0.8900	SPK.2
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Potri.017G050500 [exp]	12.96	0.8896
AT1G52540			Protein kinase superfamily pro...		Potri.001G204000 [exp]	13.74	0.8656
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.015G012900 [exp]	19.69	0.8961
AT5G36930			Disease resistance protein (TI...		Potri.008G220200 [exp]	21.21	0.8701
AT1G04780			Ankyrin repeat family protein ...		Potri.001G051400 [exp]	28.63	0.8370

Compare expression of checked genes

Potri.010G210900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.