Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55260 815 / 0 HEXO1, ATHEX2 beta-hexosaminidase 1 (.1) AT1G65590 562 / 0 HEXO3, ATHEX1 beta-hexosaminidase 3 (.1) AT1G05590 220 / 1e-64 HEXO2, ATHEX3 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G079400 [exp] 552 / 0 AT1G65590 781 / 0.0 beta-hexosaminidase 3 (.1) Potri.001G232800 [exp] 218 / 6e-64 AT1G05590 796 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.001G232600 [exp] 216 / 4e-63 AT1G05590 798 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.008G049801 [exp] 130 / 3e-36 AT3G55260 108 / 6e-29 beta-hexosaminidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003292 [exp] 780 / 0 AT3G55260 781 / 0.0 beta-hexosaminidase 1 (.1) Lus10030323 [exp] 768 / 0 AT3G55260 772 / 0.0 beta-hexosaminidase 1 (.1) Lus10022251 [exp] 411 / 3e-137 AT1G65590 564 / 0.0 beta-hexosaminidase 3 (.1) Lus10007899 [exp] 209 / 4e-60 AT1G05590 746 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Lus10030348 [exp] 205 / 7e-59 AT1G05590 748 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00728 [poplar] [flax] Glyco_hydro_20 Glycosyl hydrolase family 20, catalytic domain CL0546 [poplar] [flax] Hexosaminidase PF14845 [poplar] [flax] Glycohydro_20b2 beta-acetyl hexosaminidase like
Representative CDS sequence Show only first row Show all	>Potri.010G211000.1 pacid=42799200 polypeptide=Potri.010G211000.1.p locus=Potri.010G211000 ID=Potri.010G211000.1.v4.1 annot-version=v4.1 ATGAAATCATATCTACTGCTTCTCTTCACAATCTGTACGTTTCTGCTGTATTCATCAGCTGAATTGGATGACAATCTCACCTATGTGTGGCCTTTGCCGG CGAAATTCAGTTCTGGAAATAACACTCTCTCCGTTGACCCGGAACTGTCGCTAGTTCTTGGTGGCAAAGGAGGGGATTCGAGTATTATTAAAGATGGGTT TGGCAGATATAAAAAGATTATATTCAAGCATAGTAGTAAGAGTTACTCTGTTAATAAAAGACTGGTTTTTGATATTGGGGTTTTGAAGATTGTTGTTCTT TCTGATAATGAGGAGCTTCAACTTGGAGTGGACGAGAGTTACTTGTTGCTTGTGGAAAAGAGAAATGGGCAGTCTATTATCGGGGAAGCGTATATTGAGG CAAATACTGTGTATGGTGCATTGCGAGGGTTGGAGACGTTCAGCCAACTTTGTGCATTTGATTATGAAACTAAAGCAGTGCAAATATACAGAGCCCCATG GTACATTCTAGACAAACCAAGATTTGCATACCGTGGGCTTTTGCTTGACACATCAAGGCACTACCTACCAATTGGTGTCATTAAGCAGATAATCGAATCA ATGTCATATGCTAAACTTAATGTCCTCCATTGGCACATTATAGATGAGGAGTCATTTCCTTTAGAAGTACCTTCCTATCCAAATTTATGGAAAGGTTCAT ATACAAAATGGGAACGATACACATTTGAAGATGCATATGAAATTGTGGACTTTGCCAAAATGAGAGGTATCAATGTCATGGCTGAAATAGACGTTCCTGG GCATGCAGAATCATGGGGAACTGGATATCCTGACCTTTGGCCTTCTCCTTCCTGTAGAGAGCCACTTGATGTTTCAAAAAATTTTACTTTTGACGTGATC TCTGGCATCATGACAGACTTGAGAAAAATTTTCCCCTTTGGGCTCTTTCACTTGGGCGGTGATGAGGTTAACACAGATTGCTGGAACTCTACATCGCATG TGAAACAATGGCTTCTTGATCACAACATGACAACCAAGGAAGCATATCAATATTTTGTATTGAGAGCTCAAGAAATAGCAATTTCAAAAGGTTGGACCCC GGTCAACTGGGAAGAAACATTCAATACATTTGCATCAAACCTTAATCCAAAGACTATAGTGCATAACTGGTTGGGTGGTGGGGTTTGTGCAAAGGCTGTT GCAAAAGGTTTCAGATGCATTTTCAGCAATCAGGGATTTTGGTATCTGGACCATCTAGATGTCCCTTGGTATGAAGTTTACAAAGCTGAGCCACTTGAAG GAATAAATGATACTTCTATGCAAGAGCTAGTGCTTGGAGGAGAAGTTTGCATGTGGTCCGAGACAGCTGATACCTCAGTTGTTCAGCAAACAATATGGCC TCGGGCAGCAGCAGCAGCAGAGCGCTTGTGGAGCAACAGAGAGACCATATCCTCAGGAAATATTACCTTAACTGCATTACCTCGCTTGCATTACTTCAGA TGCCTATTGAATAGACGTGGAGTTCAGGCCGCTCCTGTCACAAACTACTATGCGAGACAACCTCCAAGTGGTCCAGGGTCATGCTATGAGCAATAA
AA sequence Show only first row Show all	>Potri.010G211000.1 pacid=42799200 polypeptide=Potri.010G211000.1.p locus=Potri.010G211000 ID=Potri.010G211000.1.v4.1 annot-version=v4.1 MKSYLLLLFTICTFLLYSSAELDDNLTYVWPLPAKFSSGNNTLSVDPELSLVLGGKGGDSSIIKDGFGRYKKIIFKHSSKSYSVNKRLVFDIGVLKIVVL SDNEELQLGVDESYLLLVEKRNGQSIIGEAYIEANTVYGALRGLETFSQLCAFDYETKAVQIYRAPWYILDKPRFAYRGLLLDTSRHYLPIGVIKQIIES MSYAKLNVLHWHIIDEESFPLEVPSYPNLWKGSYTKWERYTFEDAYEIVDFAKMRGINVMAEIDVPGHAESWGTGYPDLWPSPSCREPLDVSKNFTFDVI SGIMTDLRKIFPFGLFHLGGDEVNTDCWNSTSHVKQWLLDHNMTTKEAYQYFVLRAQEIAISKGWTPVNWEETFNTFASNLNPKTIVHNWLGGGVCAKAV AKGFRCIFSNQGFWYLDHLDVPWYEVYKAEPLEGINDTSMQELVLGGEVCMWSETADTSVVQQTIWPRAAAAAERLWSNRETISSGNITLTALPRLHYFR CLLNRRGVQAAPVTNYYARQPPSGPGSCYEQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Potri.010G211000 [exp]	0	1
AT5G47530			Auxin-responsive family protei...		Potri.010G156200 [exp]	2.44	0.8253
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.004G053200 [exp]	4.35	0.8431
AT5G54530			Protein of unknown function, D...		Potri.011G129900 [exp]	5.74	0.8159
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Potri.015G103400 [exp]	9.48	0.8035
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.001G079501 [exp]	10.48	0.7809
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.005G001300 [exp]	10.77	0.8045	Pt-GER1.1
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Potri.013G110450 [exp]	11.61	0.7429
AT1G28410			unknown protein		Potri.004G048500 [exp]	13.41	0.7659
AT4G27660			unknown protein		Potri.012G006501 [exp]	14.28	0.7966
AT1G72175			RING/U-box protein with domain...		Potri.019G078800 [exp]	15.68	0.7444

Compare expression of checked genes

Potri.010G211000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.