Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07100 1296 / 0 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) AT3G44340 506 / 1e-161 CEF clone eighty-four (.1.2) AT4G32640 490 / 8e-156 Sec23/Sec24 protein transport family protein (.1.2) AT2G27460 91 / 2e-18 sec23/sec24 transport family protein (.1) AT2G21630 57 / 8e-08 Sec23/Sec24 protein transport family protein (.1) AT3G23660 55 / 3e-07 Sec23/Sec24 protein transport family protein (.1.2) AT4G01810 54 / 7e-07 Sec23/Sec24 protein transport family protein (.1) AT1G05520 50 / 1e-05 Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049700 [exp] 1734 / 0 AT3G07100 1306 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.013G035800 [exp] 514 / 7e-165 AT4G32640 1219 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.005G049100 [exp] 498 / 2e-158 AT4G32640 1238 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.004G201800 [exp] 103 / 3e-22 AT2G27460 1266 / 0.0 sec23/sec24 transport family protein (.1) Potri.009G163300 [exp] 96 / 8e-20 AT2G27460 1235 / 0.0 sec23/sec24 transport family protein (.1) Potri.002G187100 [exp] 64 / 3e-10 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G112600 [exp] 62 / 1e-09 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G178500 [exp] 60 / 7e-09 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 44 / 0.0007 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016597 [exp] 1046 / 0 AT3G07100 1212 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Lus10000939 [exp] 458 / 7e-144 AT4G32640 1241 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Lus10004122 [exp] 439 / 5e-137 AT4G32640 1209 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Lus10013101 [exp] 270 / 2e-81 AT3G07100 194 / 6e-55 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Lus10013100 [exp] 244 / 5e-75 AT3G07100 220 / 5e-67 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Lus10020622 [exp] 117 / 2e-26 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1) Lus10004866 [exp] 116 / 4e-26 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1) Lus10019516 [exp] 47 / 9e-05 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 46 / 0.0002 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10043359 [exp] 46 / 0.0002 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04810 [poplar] [flax] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [poplar] [flax] vWA-like PF04811 [poplar] [flax] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [poplar] [flax] PF04815 [poplar] [flax] Sec23_helical Sec23/Sec24 helical domain CL0128 [poplar] [flax] PF08033 [poplar] [flax] Sec23_BS Sec23/Sec24 beta-sandwich domain
Representative CDS sequence Show only first row Show all	>Potri.010G211100.4 pacid=42797645 polypeptide=Potri.010G211100.4.p locus=Potri.010G211100 ID=Potri.010G211100.4.v4.1 annot-version=v4.1 ATGGGGACTGAAAATCCTGGCCGTCCAAATCCTGTGACTGGTTCACCATTTGCTGCTGCTCCTCCTACAGTTACACCATTTTCAGCATCTGGCCCGGTGG TGGGATCAGAGGCCTTGGGCTTTAGACCCCCTGCTCAACCTCCCCAAAACACCATGCTTTCTATGTCATCTGGGCCTGTGGCTGGATCACAAGCTTCTGG GTTCAGGCCTAACAACCCCCCAGCTAGGTTTAATGATCCTTCCGTGGCTTCTTCACCAACAGCATATGTCCCACCCACCAGCGGACCCCCCTTCCAGCGC TATCCAACACCGCAATTTCCCTCTGTTCATCAAGCTCCACCGATCGGTCAACCACCATTTCAGCCTCCTGCAGGTCAATTACCATCTCCAGCTTCCTTTC ATCCACAGCCACAAGTACCTGTAGTGCCAATGGGATCTCCTCCATCAAGTTTGAATGTTCCTCAATTGTCATCGGATTCATCGTCTTTTGCATCCAGGAT GAATTTTCAGCCATCTTTCCCACGTATGGACTCATCTTATTCCGCTTCTAGGGCCACTTTGCAGCCATCCTTGCCAGGATATGTAAAGCAGGCAAATGCA ATTTCACAAGCTTCTCCAATGACGCCCTTTCAAGCTCAACAGGGAAGTTATGCAGCATCCACACCAACACCACCTCCCCCCTTTCTTCCTCAGCAAGGAG GTTTTGCTCAACCTCCACCAGTAGGCACCCCCTTTGGATTGCATTCCAGGGATCAAATCCAACATCCAGGCTCTGCACCTCCTATAGGTGGCATCCAAGG GTTGGCAGAAGACTTCAGCTCACTCTCTGTTGGATCTGTTCCTGGATCAATTGATTCAGGGCTTGATCCAAAAGCATTACCGAGGCCATTGGATGGTGAT ATGGAGCCAAATTCATTGGGAGATGCATACTCCATGAATTGCAATCCTAGATATCTTCGGCTTACCACTTCTGCTGTACCAAGTTCACAATCTTTGCTTT CAAGGTGGCATTTTCCTCTTGGAGCAGTTATTTGCCCGCTTGCAGAAGCTCCTGATGGGGAGGAGGTACCAGTAATTAATTTTGTCTCAACTGGCATTAT TCGTTGTAGAAGATGTCGCACATATGTAAATCCCCATGTGACATTTACAGATTCTGGAAGAAAGTGGTGTTGCAACATCTGTGCTCTGCTTAATGAAGTT CCTGGAAACTATTTTGCTCAGCTAGATGCCACTGGCAGGAGAATTGATTTGGACCAGAGACCTGAGCTTACAAAGGGTAGTGTGGAGTTTGTTGCTCCGA CTGAGTATATGGTGCGGCCTCCAATGCCACCATTATTTTTCTTTCTCATTGACGTTTCAGTATCTGCAGTTAGAAGTGGTATGATTGAGGTTGTGGCCCA AACTATTAAGTCCTGTTTGGATGAGTTACCAGGCTACCCCAGAACGCAGGTTGGGTTCATCACCTTTGACAGCACAATACATTTTTACAACATGAAGTCA TCATTAACACAGCCTCAGATGATGGTGGTCTCAGATCTTGATGACATATTTGTTCCCTTGCCTGATGATCTCCTTGTTAACTTGTCCGAGTCAAGATCTG TGGTGGAAGCTTTTCTTGATAGCTTACCCTCCATGTTTCAGGACAATGTGAATGTGGAGTCTGCTCTTGGCCCTGCTGTAAAAGCAACTTTCATGGTTAT GAGCCAGCTTGGTGGGAAATTGCTGATATTTCAGAACACGATTCCATCTCTTGGTGTTGGCCGTTTGAAGTTGCGTGGAGATGATCTTCGTGTTTATGGA ACTGATAAAGAGCATGCTTTAAGAATTCCAGAAGATCCATTCTATAAAAACATGGCTGCCGAATGCACCAAGTACCAGATAGGAGTTAATGTGTATGCCT TCAGTGATAAATACACTGATATAGCCTCCTTAGGAGCTCTAGCAAAATACTCCGGAGGGCAGATATATTACTATCCAAGTTTCCAATCAGCCACTCATGG AGAGAAGTTGAGACATGAGTTGGCTAGAGATCTTACAAGAGAAACTGCTTGGGAAGCTGTCATGCGCATAAGATGTGGAAAAGGTATCCGGTTTACATCT TACCATGGAAACTTCATGCTAAGGTCCACTGATTTATTAGCACTTCCAGCTGTTGACTGTGACAAAGCATATGGGGCACAGTTATCACTTGAAGAGACAT TACTTACAAGTAAAACAGTATATTTCCAAGTTGTTTTGCTATACACTGCTTCTTGTGGAGAGAGGCGTATCAGAGTACACACAGCAGCAGTGCCTGTAGT TACAGATTTGGGGGAGATGTATCGCCAGGCTGATACTGGTGCTATTGTGTCTTTGTTTGCCAGGCTAGCAATCGAGAAATCATTGTCCCACAAGCTGGAA GATGCACGAAGCTCTGTACAGTTGAGGATTGTGAAAGCTCTTAGAGAATACCGAAATCTCTATGCCATGCAACATCGCTTGGGAGGCAGGATGATATATC CAGAACCTCTGAAGTTTTTGCCTTTGTATGGATTGGCACTTTGTAAATCAGCGGCTCTTCGAGGAGGGTATGCTGATGTTCAACTTGACGATCGCTGTGC AGCAGGATTCACTATGATGGCATTACCTGTAAAAACAATGTTGAAGCTTTTGTACCCTAGCTTGATACGAGTAGATGAATATCTTTTGAAGCCATCTGCA CAAGCCGACGAATTCAAAAACATCATGAAACGGTTACCATTGACCTCCGAGAGCTTAGACTCCAGAGGCCTTTATGTATATGATGACGGTTTTCGCTTTG TTGTATGGTTTGGTAGAATGTTTTCACCTGATGTAGCAATGAATTTACTTGGACAAGATGCTGCTGTTGAGTTTTCCAAGGTTGCTCTCGGTAAGCATGA TACTGAGATGTCAAGAAAGCTAATGGGGCTACTTAAGAAATTAAGAGATAGTGATCCTTCATATTATCAGCTTTGCAATCTTGTAAGACAAGGTGAACAG CCCAGAGAAGGTTACCTTCTTCTCACAAATCTTGTGGAGGACCAGATTGGGGGTGCCAGTGGTTATAGTGACTGGATGGTGCAAATACATCGGCAAGTCC AGCAAAATGCATAA
AA sequence Show only first row Show all	>Potri.010G211100.4 pacid=42797645 polypeptide=Potri.010G211100.4.p locus=Potri.010G211100 ID=Potri.010G211100.4.v4.1 annot-version=v4.1 MGTENPGRPNPVTGSPFAAAPPTVTPFSASGPVVGSEALGFRPPAQPPQNTMLSMSSGPVAGSQASGFRPNNPPARFNDPSVASSPTAYVPPTSGPPFQR YPTPQFPSVHQAPPIGQPPFQPPAGQLPSPASFHPQPQVPVVPMGSPPSSLNVPQLSSDSSSFASRMNFQPSFPRMDSSYSASRATLQPSLPGYVKQANA ISQASPMTPFQAQQGSYAASTPTPPPPFLPQQGGFAQPPPVGTPFGLHSRDQIQHPGSAPPIGGIQGLAEDFSSLSVGSVPGSIDSGLDPKALPRPLDGD MEPNSLGDAYSMNCNPRYLRLTTSAVPSSQSLLSRWHFPLGAVICPLAEAPDGEEVPVINFVSTGIIRCRRCRTYVNPHVTFTDSGRKWCCNICALLNEV PGNYFAQLDATGRRIDLDQRPELTKGSVEFVAPTEYMVRPPMPPLFFFLIDVSVSAVRSGMIEVVAQTIKSCLDELPGYPRTQVGFITFDSTIHFYNMKS SLTQPQMMVVSDLDDIFVPLPDDLLVNLSESRSVVEAFLDSLPSMFQDNVNVESALGPAVKATFMVMSQLGGKLLIFQNTIPSLGVGRLKLRGDDLRVYG TDKEHALRIPEDPFYKNMAAECTKYQIGVNVYAFSDKYTDIASLGALAKYSGGQIYYYPSFQSATHGEKLRHELARDLTRETAWEAVMRIRCGKGIRFTS YHGNFMLRSTDLLALPAVDCDKAYGAQLSLEETLLTSKTVYFQVVLLYTASCGERRIRVHTAAVPVVTDLGEMYRQADTGAIVSLFARLAIEKSLSHKLE DARSSVQLRIVKALREYRNLYAMQHRLGGRMIYPEPLKFLPLYGLALCKSAALRGGYADVQLDDRCAAGFTMMALPVKTMLKLLYPSLIRVDEYLLKPSA QADEFKNIMKRLPLTSESLDSRGLYVYDDGFRFVVWFGRMFSPDVAMNLLGQDAAVEFSKVALGKHDTEMSRKLMGLLKKLRDSDPSYYQLCNLVRQGEQ PREGYLLLTNLVEDQIGGASGYSDWMVQIHRQVQQNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.010G211100 [exp]	0	1
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.002G047700 [exp]	2.44	0.7529
AT1G35220			unknown protein		Potri.002G100800 [exp]	3.16	0.7385
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.013G128500 [exp]	6.48	0.7116
AT1G04140			Transducin family protein / WD...		Potri.002G254700 [exp]	6.92	0.7359
AT1G73460			Protein kinase superfamily pro...		Potri.015G033400 [exp]	7.48	0.7405
AT5G65950			unknown protein		Potri.011G144700 [exp]	8.06	0.7790
AT4G38200			SEC7-like guanine nucleotide e...		Potri.009G169800 [exp]	8.94	0.7632
AT4G02480			AAA-type ATPase family protein...		Potri.012G096300 [exp]	14.69	0.7288
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.019G052100 [exp]	19.07	0.6854	Pt-XPO1.1
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Potri.003G033450 [exp]	19.89	0.7150

Compare expression of checked genes

Potri.010G211100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.