Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75270 254 / 4e-87 DHAR2 dehydroascorbate reductase 2 (.1) AT1G19570 234 / 3e-79 DHAR5, DHAR1, ATDHAR1 DEHYDROASCORBATE REDUCTASE 5, dehydroascorbate reductase (.1.2) AT5G16710 224 / 1e-74 DHAR3 dehydroascorbate reductase 1 (.1) AT1G19550 185 / 5e-61 Glutathione S-transferase family protein (.1) AT2G02380 39 / 0.0006 ATGSTZ2 glutathione S-transferase (class zeta) 2 (.1) AT2G02390 39 / 0.0007 GST18, ATGSTZ1 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049300 [exp] 286 / 6e-100 AT1G75270 340 / 2e-120 dehydroascorbate reductase 2 (.1) Potri.017G125100 [exp] 222 / 1e-73 AT5G16710 389 / 4e-138 dehydroascorbate reductase 1 (.1) Potri.010G061200 [exp] 41 / 0.0001 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.004G080400 [exp] 40 / 0.0003 AT1G78380 231 / 5e-77 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.004G080700 [exp] 39 / 0.0008 AT1G78380 217 / 6e-72 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023441 [exp] 264 / 5e-91 AT1G75270 327 / 3e-115 dehydroascorbate reductase 2 (.1) Lus10023442 [exp] 261 / 7e-90 AT1G75270 317 / 5e-111 dehydroascorbate reductase 2 (.1) Lus10040320 [exp] 258 / 4e-85 AT1G75270 320 / 4e-108 dehydroascorbate reductase 2 (.1) Lus10009135 [exp] 223 / 6e-73 AT5G16710 372 / 5e-130 dehydroascorbate reductase 1 (.1) Lus10028510 [exp] 206 / 3e-65 AT5G16710 352 / 2e-120 dehydroascorbate reductase 1 (.1) Lus10005367 [exp] 48 / 5e-07 AT2G02390 284 / 4e-98 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10020519 [exp] 47 / 8e-07 AT2G02390 283 / 2e-97 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF13410 [poplar] [flax] GST_C_2 Glutathione S-transferase, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF13417 [poplar] [flax] GST_N_3 Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G211600.8 pacid=42796911 polypeptide=Potri.010G211600.8.p locus=Potri.010G211600 ID=Potri.010G211600.8.v4.1 annot-version=v4.1 ATGGACGTAAACCCGGAAGGAAAGGTTCCAGTGGTGAAATTTGATGACAAATGGGTCTCAGACTCTGATGTGATTGTTGGGATCTTAGAGGAGAAATACC CTGAGCCCTCTCTTGCCACTCCTCCGGAATTTGCCTCTGTGGGCTCAAAGATATTCCCATCTTTCGTCAAGTTCTTGAAGAGCAAGGATCCCAACGATGG TACTGAGCAGGCTTTGCTTGAGGAATTGAAGGCGTTGGATGATCATCTTAAAGCACACGGTCCATTCATTGCTGGAGAAAAGATCACTGCTGTAGATTTG AGCTTGGCTCCGAAGCTTTACCATCTTGAGGTTGCTCTTGCCCATTTCAAGAACTGGACTATCCCTGACAAGTTGACACATGTCCTCAACTACATAAAGT TGCTGTTCTCCCATGAATCTTTCGAGAAGACGAAGGCTGCTAAGGAACATATCATTGCTGGATGGGAGCCAAAGGTCAATGCATGA
AA sequence Show only first row Show all	>Potri.010G211600.8 pacid=42796911 polypeptide=Potri.010G211600.8.p locus=Potri.010G211600 ID=Potri.010G211600.8.v4.1 annot-version=v4.1 MDVNPEGKVPVVKFDDKWVSDSDVIVGILEEKYPEPSLATPPEFASVGSKIFPSFVKFLKSKDPNDGTEQALLEELKALDDHLKAHGPFIAGEKITAVDL SLAPKLYHLEVALAHFKNWTIPDKLTHVLNYIKLLFSHESFEKTKAAKEHIIAGWEPKVNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Potri.010G211600 [exp]	0	1
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Potri.005G053000 [exp]	10.95	0.8561
AT3G28760			unknown protein		Potri.017G080300 [exp]	11.87	0.8092
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Potri.002G229325 [exp]	14.00	0.8633
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Potri.002G229350 [exp]	18.16	0.8509
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Potri.001G403300 [exp]	21.56	0.8675	PORA.2
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.015G065600 [exp]	23.10	0.8841
AT2G26900		BASS2	bile acid:sodium symporter fam...		Potri.018G074400 [exp]	24.37	0.8531
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.005G218300 [exp]	27.20	0.8702	Pt-AUX28.2
AT4G15510			Photosystem II reaction center...		Potri.013G006500 [exp]	29.18	0.8669
AT3G63170			Chalcone-flavanone isomerase f...		Potri.002G052200 [exp]	29.49	0.8474

Compare expression of checked genes

Potri.010G211600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.